Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400063189 | Potato | cytosol | 93.4 | 98.9 |
| VIT_07s0130g00490.t01 | Wine grape | cytosol | 85.42 | 85.27 |
| VIT_07s0031g02330.t01 | Wine grape | cytosol | 85.24 | 85.1 |
| KRH27971 | Soybean | nucleus | 81.77 | 81.63 |
| KRH77487 | Soybean | nucleus | 80.56 | 80.28 |
| Bra033769.1-P | Field mustard | nucleus | 77.6 | 77.34 |
| AT3G48150.1 | Thale cress | cytosol | 77.6 | 77.2 |
| Bra018081.1-P | Field mustard | cytosol | 76.39 | 75.99 |
| KRH24006 | Soybean | cytosol | 77.26 | 75.55 |
| CDY58070 | Canola | cytosol | 64.76 | 75.35 |
| CDY70805 | Canola | nucleus | 39.06 | 74.75 |
| CDY36901 | Canola | cytosol | 62.67 | 72.06 |
| CDY44976 | Canola | cytosol | 62.85 | 71.68 |
| CDY58069 | Canola | nucleus | 52.95 | 68.39 |
| GSMUA_Achr11P... | Banana | cytosol | 71.18 | 67.88 |
| TraesCS6B01G273900.1 | Wheat | cytosol | 68.4 | 65.78 |
| TraesCS6A01G251400.1 | Wheat | cytosol | 68.4 | 65.78 |
| EES07517 | Sorghum | cytosol | 68.4 | 65.67 |
| Zm00001d017475_P002 | Maize | cytosol | 68.23 | 65.61 |
| TraesCS6D01G233200.1 | Wheat | cytosol | 68.23 | 65.61 |
| Os02t0656300-01 | Rice | cytosol | 67.53 | 65.16 |
| HORVU6Hr1G062870.1 | Barley | cytosol, plastid | 68.4 | 60.71 |
| HORVU0Hr1G027080.4 | Barley | plastid | 62.67 | 60.17 |
| KRH29310 | Soybean | cytosol | 32.29 | 58.12 |
| Os06t0679100-00 | Rice | plastid | 15.62 | 50.56 |
| Solyc03g061600.2.1 | Tomato | endoplasmic reticulum | 18.06 | 15.98 |
| Solyc03g061590.2.1 | Tomato | cytosol | 3.99 | 12.71 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:13.3.4.1.1.2.4 | InterPro:APC8 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005680 | GO:GO:0007049 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0030071 | InterPro:IPR011990 | InterPro:IPR013026 |
| InterPro:IPR019734 | UniProt:K4BKM6 | PFAM:PF04049 | PFAM:PF13176 | PFAM:PF13181 | PFAM:PF13414 |
| PFscan:PS50005 | PFscan:PS50293 | PANTHER:PTHR12558 | PANTHER:PTHR12558:SF10 | SMART:SM00028 | SUPFAM:SSF48452 |
| EnsemblPlantsGene:Solyc03g113740.2 | EnsemblPlants:Solyc03g113740.2.1 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_repeat | UniParc:UPI0002767E04 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr3:-:63792587..63798798
Molecular Weight (calculated)
66825.5 Da
IEP (calculated)
6.457
GRAVY (calculated)
-0.444
Length
576 amino acids
Sequence
(BLAST)
(BLAST)
001: MGIKENCRNE LRAAVRQLSD RCLYSASKWA AEQLVGIEQD PAKYTPSHTR FQRGSSSIRR RFRTATEAAF TSTPAAGVSH VATPTVPEDD NEAIDSDFYL
101: LAKSYFDCRE YRRATHVLRD QTGKKAVFLR CYALFLAGEK RKEEEMIELE GPLGKSDVVN LELVSIEREL SALRKNGSID SFGLYLYGLV LKQKGSDNLA
201: RTVLVDSVNS YPWNWSAWSE LQLLCTTAET LNSLNLNNHW MKDFFLANAY QELRMHSESL VKYENLQGTF SFSNYIQAQI AKAQYSLREF EQVEVIFEEL
301: LRNDPYRIED MDMYSNVLYA KECFSALSYL AHRVFLTDKY RPESCCIIGN YYSLKGQHEK SVMYFRRALK LNKNYLSAWT LMGHEYVEMK NTPAAVDAYR
401: RAVDINPCDY RAWYGLGQAY EMMGMPFYAL HYFKKSVFLQ PSDSRLWIAM AQCFETEQLH MLEEAIKCYR RAANCNDREA IALHQLAKLH AELGRSEEAA
501: FYYKKDLEIM EAEEREGPNL VEALMFLARY YKAQKRFEDA EVYCTRLLDY SGPEKETAKS LLRGIRYEMD VEHLPP
101: LAKSYFDCRE YRRATHVLRD QTGKKAVFLR CYALFLAGEK RKEEEMIELE GPLGKSDVVN LELVSIEREL SALRKNGSID SFGLYLYGLV LKQKGSDNLA
201: RTVLVDSVNS YPWNWSAWSE LQLLCTTAET LNSLNLNNHW MKDFFLANAY QELRMHSESL VKYENLQGTF SFSNYIQAQI AKAQYSLREF EQVEVIFEEL
301: LRNDPYRIED MDMYSNVLYA KECFSALSYL AHRVFLTDKY RPESCCIIGN YYSLKGQHEK SVMYFRRALK LNKNYLSAWT LMGHEYVEMK NTPAAVDAYR
401: RAVDINPCDY RAWYGLGQAY EMMGMPFYAL HYFKKSVFLQ PSDSRLWIAM AQCFETEQLH MLEEAIKCYR RAANCNDREA IALHQLAKLH AELGRSEEAA
501: FYYKKDLEIM EAEEREGPNL VEALMFLARY YKAQKRFEDA EVYCTRLLDY SGPEKETAKS LLRGIRYEMD VEHLPP
001: MVSKECCRNE IRAAIRQLSD RCLYSAAKWA GEQLVGIEQD PSNFTPANTR FQRGSSSIRR RFSTNESIST PLPSVGFSQA ATPLPEEDEA IDGDIYLLAK
101: SYFDCREYRR ASHMLRDQVS KKSLFLRYYA LYLAGEKRKE EEMIELEGPL GKSDAINREL VSLERDLSAL RRTGAIDSFG LYLYGVVLKE KGNESLARAS
201: LVESVNSYPW NWSAWSELQS LCTSIEILNS LNLNNHWMKE FFLGNAYQEL RMHTESLAKY EYLQGIFSFS NYIQAQTAKA QYSLREFDQV EIMFEELLRN
301: DPYRVEDMDL YSNVLYAKEA CAALSYLAHK VFLTDKYRPE SCCIIGNYYS LKGQHEKAVM YFRRALKLNK KYLSAWTLMG HEYVEMKNTP AAIDAYRRAV
401: DINPTDYRAW YGLGQAYEMM GMPFYALHYF RKSIFFLPND SRLWIAMAKC YQTEQLYMLE EAIKCYKRAV NCTDTEGIAL NQLAKLHQKL GRNEEAAYYF
501: EKDLERMDAE GLEGPNMFEA LVFLATHFKN HKKFEEAEVY CTRLLDYSGP EKEKAKSLLR GIRMAQTGFP SMDLEHFPI
101: SYFDCREYRR ASHMLRDQVS KKSLFLRYYA LYLAGEKRKE EEMIELEGPL GKSDAINREL VSLERDLSAL RRTGAIDSFG LYLYGVVLKE KGNESLARAS
201: LVESVNSYPW NWSAWSELQS LCTSIEILNS LNLNNHWMKE FFLGNAYQEL RMHTESLAKY EYLQGIFSFS NYIQAQTAKA QYSLREFDQV EIMFEELLRN
301: DPYRVEDMDL YSNVLYAKEA CAALSYLAHK VFLTDKYRPE SCCIIGNYYS LKGQHEKAVM YFRRALKLNK KYLSAWTLMG HEYVEMKNTP AAIDAYRRAV
401: DINPTDYRAW YGLGQAYEMM GMPFYALHYF RKSIFFLPND SRLWIAMAKC YQTEQLYMLE EAIKCYKRAV NCTDTEGIAL NQLAKLHQKL GRNEEAAYYF
501: EKDLERMDAE GLEGPNMFEA LVFLATHFKN HKKFEEAEVY CTRLLDYSGP EKEKAKSLLR GIRMAQTGFP SMDLEHFPI
Arabidopsis Description
APC8Anaphase-promoting complex subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9STS3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.