Factsheet for Solyc07g065960.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, golgi, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	golgi, nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g096760.1.1
Solyc03g096770.1.1
Solyc03g096780.1.1
Solyc06g072990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13310.1	Solyc03g096760.1.1	AT3G49580.1	21798944
AT3G13310.1	Solyc03g096770.1.1	AT3G49580.1	21798944
AT3G13310.1	Solyc03g096780.1.1	AT3G49580.1	21798944
AT3G13310.1	Solyc06g072990.1.1	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400056986	Potato	plastid	70.81	70.81
CDY44009	Canola	cytosol	17.39	51.85
Solyc07g065970.1.1	Tomato	mitochondrion	52.8	51.83
TraesCS7B01G127100.1	Wheat	cytosol, mitochondrion	29.81	48.48
EER89648	Sorghum	plastid	29.81	46.6
VIT_19s0015g01370.t01	Wine grape	plastid	41.61	45.27
TraesCS7D01G221800.1	Wheat	plastid	30.43	44.95
TraesCS7A01G220300.1	Wheat	plastid	29.81	44.04
HORVU7Hr1G045280.1	Barley	plastid	29.81	43.24
KRH14184	Soybean	mitochondrion, plastid	37.89	42.96
CDY24196	Canola	plastid	40.99	41.51
KRG98415	Soybean	plastid	38.51	41.06
Bra001497.1-P	Field mustard	plastid	39.75	40.51
Bra039384.1-P	Field mustard	plastid	39.13	40.13
CDX82546	Canola	plastid	39.13	39.87
GSMUA_Achr9P19770_001	Banana	plastid	31.06	39.37
CDX75702	Canola	plastid	38.51	38.51
CDY43357	Canola	plastid	37.89	38.36
Bra034691.1-P	Field mustard	plastid	37.89	38.36
CDY23588	Canola	plastid	37.89	37.89
AT3G13310.1	Thale cress	plastid	36.65	37.58
GSMUA_Achr4P01700_001	Banana	plastid	29.81	37.21
KRH46491	Soybean	plastid	34.78	35.9
Solyc02g062160.1.1	Tomato	plastid	31.68	33.12
Solyc04g081530.1.1	Tomato	plastid	27.95	29.03

Protein Annotations

EnsemblPlants:Solyc07g065960.1.1	EnsemblPlantsGene:Solyc07g065960.1	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:IPR001623	InterPro:IPR036869
InterPro:J_dom_sf	PANTHER:PTHR45432	PFAM:PF00226	PFscan:PS50076	PRINTS:PR00625	SMART:SM00271
SUPFAM:SSF46565	UniParc:UPI000276B082	UniProt:K4CHS2	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr7:-:67536064..67536549

Molecular Weight (calculated)

18222.6 Da

IEP (calculated)

9.998

GRAVY (calculated)

-0.519

Length

161 amino acids

Sequence
(BLAST)

001: MIQSLTLISS SPFPFPLHQS SNSADAAIQS NRYSLFNGKS NRRGRICASA VAEAPMMMEK RSVSLYEILR VKRDASPKEI KAAYRNLAKL YHPDSASLPE
101: ESSDGRNFIE IHDAYVTLSD PSARALYDLK LSVGSRRRGF ARSVDGFRIY PTRRWETDQC W

Best Arabidopsis Sequence Match ( AT3G13310.1 )
(BLAST)

001: MAGTLVNSAG RFSPGNCILP QQRTARFYSG TARFPTGAPS FKASAQTLNA EPAVTESVRR RVSSLYELLK VNETASLTEI KTAYRSLAKV YHPDASESDG
101: RDFMEIHKAY ATLADPTTRA IYDSTLRVPR RRVHAGAMGR SGRVYATTRR WETDQCW

Arabidopsis Description

At3g13310 [Source:UniProtKB/TrEMBL;Acc:Q9LTT7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.