Factsheet for Solyc02g062160.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2
endoplasmic reticulum 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g061020.2.1
Solyc08g007120.2.1
Solyc08g077460.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17880.1	Solyc06g061020.2.1	AT4G17680.1	21798944
AT2G17880.1	Solyc08g007120.2.1	AT4G17680.1	21798944
AT2G17880.1	Solyc08g077460.2.1	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69778	Soybean	mitochondrion	36.36	54.9
PGSC0003DMT400061357	Potato	plastid	52.6	52.94
KRH28802	Soybean	plastid	46.75	45.57
KRH76655	Soybean	plastid	45.45	44.3
KRH38394	Soybean	plastid	39.61	43.88
KRH08066	Soybean	plastid	40.91	40.13
AT2G17880.1	Thale cress	plastid	41.56	40.0
KRH20682	Soybean	plastid	35.71	39.86
Bra011656.1-P	Field mustard	plastid	40.26	38.99
Bra037247.1-P	Field mustard	plastid	38.31	38.31
CDY30342	Canola	plastid	38.31	38.31
CDX69193	Canola	plastid	40.26	38.27
CDX75547	Canola	plastid	39.61	38.12
Bra017744.1-P	Field mustard	plastid	39.61	37.89
CDX72573	Canola	plastid	39.61	37.89
KRG99625	Soybean	plastid	32.47	37.88
CDY26834	Canola	plastid	38.31	37.34
Bra040872.1-P	Field mustard	plastid	38.31	37.11
AT4G36040.1	Thale cress	plastid	38.31	36.65
Zm00001d053213_P001	Maize	mitochondrion, plastid	33.12	36.43
KRH08065	Soybean	plastid	38.96	36.36
HORVU7Hr1G057330.1	Barley	plastid	33.12	36.17
GSMUA_Achr3P12640_001	Banana	plastid	31.17	36.09
CDY29205	Canola	plastid	37.01	35.85
GSMUA_Achr5P11400_001	Banana	plastid	35.71	35.71
GSMUA_Achr1P18570_001	Banana	mitochondrion	32.47	35.71
Bra010502.1-P	Field mustard	plastid	37.01	35.4
CDY24828	Canola	plastid	37.01	35.4
Zm00001d028404_P001	Maize	plastid	35.06	35.06
HORVU7Hr1G116890.2	Barley	plastid	31.82	35.0
TraesCS7A01G528700.1	Wheat	plastid	31.82	35.0
TraesCS7B01G446100.1	Wheat	mitochondrion, plastid	29.22	34.88
TraesCS7A01G271600.1	Wheat	plastid	31.82	34.75
TraesCS7A01G529400.1	Wheat	plastid	29.22	34.62
CDY07811	Canola	plastid	36.36	34.57
TraesCS7D01G516600.1	Wheat	plastid	31.17	34.53
CDY34072	Canola	plastid	35.71	34.16
TraesCS7B01G170400.1	Wheat	plastid	31.17	34.04
Zm00001d014790_P001	Maize	plastid	28.57	33.85
VIT_04s0023g03470.t01	Wine grape	cytosol, plastid	44.16	33.83
HORVU7Hr1G116960.1	Barley	plastid	29.87	33.82
TraesCS7A01G529000.1	Wheat	plastid	30.52	33.81
TraesCS7D01G516900.1	Wheat	plastid	30.52	33.81
TraesCS7B01G445500.1	Wheat	plastid	30.52	33.81
TraesCS7B01G445700.1	Wheat	plastid	30.52	33.81
TraesCS7D01G516700.1	Wheat	plastid	30.52	33.57
Zm00001d032030_P001	Maize	plastid	29.87	33.33
TraesCS7D01G271900.1	Wheat	plastid	30.52	33.33
KRH50148	Soybean	plastid	30.52	33.33
TraesCS7A01G528900.1	Wheat	plastid	29.87	33.09
TraesCS7A01G528800.1	Wheat	plastid	29.22	33.09
Os06t0716100-01	Rice	plastid	28.57	33.08
KXG25435	Sorghum	plastid	31.82	32.89
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	31.17	32.88
EER92566	Sorghum	plastid	33.77	32.7
TraesCS7B01G445600.1	Wheat	plastid	29.22	32.61
TraesCS7B01G446000.1	Wheat	plastid	27.27	32.56
TraesCS7B01G448500.1	Wheat	plastid	27.27	32.56
TraesCS7A01G529200.1	Wheat	plastid	29.22	32.14
TraesCS7D01G517000.1	Wheat	plastid	29.22	32.14
TraesCS7B01G445800.1	Wheat	plastid	29.22	32.14
EER88964	Sorghum	plastid	28.57	32.12
TraesCS3D01G308300.1	Wheat	plastid	28.57	32.12
Solyc07g065960.1.1	Tomato	plastid	33.12	31.68
Solyc04g081530.1.1	Tomato	plastid	31.82	31.61
Os08t0548400-00	Rice	plastid	29.87	31.51
TraesCS7D01G516800.1	Wheat	plastid	28.57	31.43
Os03t0244950-00	Rice	mitochondrion, nucleus, plastid	32.47	29.24
TraesCS4B01G226300.1	Wheat	plastid	30.52	28.66
GSMUA_Achr5P18850_001	Banana	plastid	31.82	28.66
GSMUA_Achr1P02450_001	Banana	plastid	27.27	28.38
TraesCS4A01G069100.1	Wheat	plastid	30.52	28.31
Solyc07g065970.1.1	Tomato	mitochondrion	29.22	27.44
TraesCS4D01G226900.1	Wheat	plastid	29.87	27.22
TraesCS7B01G445900.1	Wheat	mitochondrion, plastid	26.62	26.8
HORVU4Hr1G063590.1	Barley	plastid	29.87	26.59
GSMUA_Achr8P19450_001	Banana	plastid	29.22	25.57
TraesCS4B01G226200.1	Wheat	plastid	27.92	24.02
KRH69779	Soybean	mitochondrion	31.82	24.02

Protein Annotations

EnsemblPlants:Solyc02g062160.1.1	EnsemblPlantsGene:Solyc02g062160.1	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:IPR001623	InterPro:IPR036869
InterPro:J_dom_sf	PANTHER:PTHR44240	PANTHER:PTHR44240:SF3	PFAM:PF00226	PFscan:PS50076	PRINTS:PR00625
SEG:seg	SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI000276809A	UniProt:K4B6A6	MapMan:35.1

Description

No Description!

Coordinates

chr2:-:33735927..33736391

Molecular Weight (calculated)

17311.4 Da

IEP (calculated)

9.110

GRAVY (calculated)

-0.362

Length

154 amino acids

Sequence
(BLAST)

001: MISTSFHQSP LPTPADPFTS GGNSMLSKSC VRFRQSGSFS VAATSYSTSV ATCVPVYVSP ASFYEILGIP IGATIEEVKA AYRRLVRVYH PDVAAIDQKD
101: SYADEFMKIR AAYCTLFDPN KRAQYDRSLY PRRRTGNLYS AAHTRRNWET DQCW

Best Arabidopsis Sequence Match ( AT2G17880.1 )
(BLAST)

001: MLSSSPTFFA TPFLSSSSSS SPSFSSTSPP SRISRISPSL STTTASYTCA EDLPRLRQIP QRFSATASLY EILEIPVGST SQEIKSAYRR LARICHPDVA
101: RNSRDNSSAD DFMKIHAAYC TLSDPEKRAV YDRRTLLRSR PLTAGYGSYG GRNWETDQCW

Arabidopsis Description

At2g17880 [Source:UniProtKB/TrEMBL;Acc:O48828]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.