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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 7
  • nucleus 2
  • endoplasmic reticulum 1
  • mitochondrion 1
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400025543 Potato plastid 87.1 86.54
Solyc02g062160.1.1 Tomato plastid 31.61 31.82
VIT_18s0001g14440.t01 Wine grape plastid 41.94 29.68
Solyc07g065960.1.1 Tomato plastid 29.03 27.95
Solyc07g065970.1.1 Tomato mitochondrion 29.03 27.44
Protein Annotations
EnsemblPlants:Solyc04g081530.1.1EnsemblPlantsGene:Solyc04g081530.1Gene3D:1.10.287.110InterPro:DnaJ_domainInterPro:DnaJ_domain_CSInterPro:IPR001623
InterPro:IPR036869InterPro:J_dom_sfPANTHER:PTHR44240PANTHER:PTHR44240:SF3PFAM:PF00226PFscan:PS50076
PRINTS:PR00625ScanProsite:PS00636SEG:segSMART:SM00271SUPFAM:SSF46565UniParc:UPI000276606B
UniProt:K4BVN2MapMan:35.1::::
Description
No Description!
Coordinates
chr4:+:65476903..65477370
Molecular Weight (calculated)
17004.7 Da
IEP (calculated)
10.312
GRAVY (calculated)
-0.437
Length
155 amino acids
Sequence
(BLAST)
001: MASSSFLLST SITGSKLSAA APPRSSVSFK QRPFSVSAAY STAERTSTAT TSSSTIASHT SLYEVLGIQF GANSHEIKSA YRKLARILHP DVRNSSAEDF
101: IRVQSAYATL SDPEKRANYD RNLFGNRIAR PVDFSTAGAR SHYTVRRGWE TDQCW
Best Arabidopsis Sequence Match ( AT2G17880.1 )
(BLAST)
001: MLSSSPTFFA TPFLSSSSSS SPSFSSTSPP SRISRISPSL STTTASYTCA EDLPRLRQIP QRFSATASLY EILEIPVGST SQEIKSAYRR LARICHPDVA
101: RNSRDNSSAD DFMKIHAAYC TLSDPEKRAV YDRRTLLRSR PLTAGYGSYG GRNWETDQCW
Arabidopsis Description
At2g17880 [Source:UniProtKB/TrEMBL;Acc:O48828]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.