Factsheet for Solyc07g065970.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
nucleus 2
mitochondrion 4
endoplasmic reticulum 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g096760.1.1
Solyc03g096770.1.1
Solyc03g096780.1.1
Solyc06g072990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13310.1	Solyc03g096760.1.1	AT3G49580.1	21798944
AT3G13310.1	Solyc03g096770.1.1	AT3G49580.1	21798944
AT3G13310.1	Solyc03g096780.1.1	AT3G49580.1	21798944
AT3G13310.1	Solyc06g072990.1.1	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400056985	Potato	plastid	84.15	84.15
Solyc07g065960.1.1	Tomato	plastid	51.83	52.8
CDY44009	Canola	cytosol	17.07	51.85
KRG98415	Soybean	plastid	40.24	43.71
EER89648	Sorghum	plastid	27.44	43.69
TraesCS7B01G127100.1	Wheat	cytosol, mitochondrion	25.61	42.42
KRH14184	Soybean	mitochondrion, plastid	36.59	42.25
VIT_19s0015g01370.t01	Wine grape	plastid	37.8	41.89
TraesCS7A01G220300.1	Wheat	plastid	26.83	40.37
HORVU7Hr1G045280.1	Barley	plastid	26.83	39.64
TraesCS7D01G221800.1	Wheat	plastid	26.22	39.45
CDY43357	Canola	plastid	37.8	38.99
GSMUA_Achr4P01700_001	Banana	plastid	30.49	38.76
KRH46491	Soybean	plastid	36.59	38.46
AT3G13310.1	Thale cress	plastid	36.59	38.22
CDX75702	Canola	plastid	37.2	37.89
CDY24196	Canola	plastid	36.59	37.74
Bra039384.1-P	Field mustard	plastid	35.98	37.58
CDX82546	Canola	plastid	35.98	37.34
CDY23588	Canola	plastid	36.59	37.27
Bra034691.1-P	Field mustard	plastid	35.98	37.11
Bra001497.1-P	Field mustard	plastid	34.15	35.44
GSMUA_Achr9P19770_001	Banana	plastid	27.44	35.43
Solyc02g062160.1.1	Tomato	plastid	27.44	29.22
Solyc04g081530.1.1	Tomato	plastid	27.44	29.03

Protein Annotations

EnsemblPlants:Solyc07g065970.1.1	EnsemblPlantsGene:Solyc07g065970.1	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	InterPro:IPR001623
InterPro:IPR036869	InterPro:J_dom_sf	PANTHER:PTHR44240	PANTHER:PTHR44240:SF5	PFAM:PF00226	PFscan:PS50076
PRINTS:PR00625	ScanProsite:PS00636	SEG:seg	SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI000276B083
UniProt:K4CHS3	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr7:-:67538645..67539139

Molecular Weight (calculated)

18300.3 Da

IEP (calculated)

9.857

GRAVY (calculated)

-0.627

Length

164 amino acids

Sequence
(BLAST)

001: MVQSLTLPAG NTFRFSLHNL PSSTAGFRSG VTFPRRNNRT AAVYAAAVAE APPELQRRTP ASLYDVLRVK SNASPKEIKT AYRNLAKLYH PDAASLSEES
101: SDGRHFIEIH EAYATLSDPV SRDLYDLKLN MSSGRRGFGS SGDGIRRNGS EFYPTRRWET DQCW

Best Arabidopsis Sequence Match ( AT3G13310.1 )
(BLAST)

001: MAGTLVNSAG RFSPGNCILP QQRTARFYSG TARFPTGAPS FKASAQTLNA EPAVTESVRR RVSSLYELLK VNETASLTEI KTAYRSLAKV YHPDASESDG
101: RDFMEIHKAY ATLADPTTRA IYDSTLRVPR RRVHAGAMGR SGRVYATTRR WETDQCW

Arabidopsis Description

At3g13310 [Source:UniProtKB/TrEMBL;Acc:Q9LTT7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.