CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY08148

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13310.1	CDY08148	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75702	Canola	plastid	96.2	94.41
Bra001497.1-P	Field mustard	plastid	94.3	94.3
CDY44009	Canola	cytosol	28.48	83.33
CDY43357	Canola	plastid	72.15	71.7
CDY24196	Canola	plastid	71.52	71.07
CDY23588	Canola	plastid	70.25	68.94
AT3G13310.1	Thale cress	plastid	61.39	61.78
EER89648	Sorghum	plastid	29.75	45.63
TraesCS7A01G220300.1	Wheat	plastid	31.01	44.95
TraesCS7B01G127100.1	Wheat	cytosol, mitochondrion	27.85	44.44
VIT_19s0015g01370.t01	Wine grape	plastid	39.87	42.57
HORVU7Hr1G045280.1	Barley	plastid	29.75	42.34
TraesCS7D01G221800.1	Wheat	plastid	29.11	42.2
KRH14184	Soybean	mitochondrion, plastid	36.71	40.85
GSMUA_Achr9P19770_001	Banana	plastid	32.28	40.16
Solyc07g065960.1.1	Tomato	plastid	39.87	39.13
PGSC0003DMT400056986	Potato	plastid	39.24	38.51
GSMUA_Achr4P01700_001	Banana	plastid	31.01	37.98
KRG98415	Soybean	plastid	36.08	37.75
Solyc07g065970.1.1	Tomato	mitochondrion	37.34	35.98
PGSC0003DMT400056985	Potato	plastid	36.71	35.37
KRH46491	Soybean	plastid	33.54	33.97
CDX72573	Canola	plastid	30.38	29.81
CDX69193	Canola	plastid	29.75	29.01
CDX75547	Canola	plastid	29.11	28.75
CDY24828	Canola	plastid	29.11	28.57
CDY34072	Canola	plastid	28.48	27.95
CDY30342	Canola	plastid	27.22	27.92
CDY29205	Canola	plastid	27.85	27.67
CDY26834	Canola	plastid	26.58	26.58
CDY07811	Canola	plastid	26.58	25.93

Protein Annotations

Gene3D:1.10.287.110	MapMan:35.2	EnsemblPlants:CDX82546	ProteinID:CDX82546	ProteinID:CDX82546.1	InterPro:DnaJ_domain
InterPro:DnaJ_domain_CS	EnsemblPlantsGene:GSBRNA2T00137709001	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	PFAM:PF00226
PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PANTHER:PTHR44240	PANTHER:PTHR44240:SF5	SMART:SM00271
SUPFAM:SSF46565	UniParc:UPI0004EECB1B	:	:	:	:

Description

BnaA03g32750D

Coordinates

chrLK031828:+:1863708..1864245

Molecular Weight (calculated)

17364.2 Da

IEP (calculated)

10.164

GRAVY (calculated)

-0.637

Length

158 amino acids

Sequence
(BLAST)

001: MSGTLIYSAV NSLRSSPGNS LPQPKPTRLH NGNARFPTGA TSFRASAAQT LNAEPAVTES VRRRASNLYE LLRVDETASL TEIKTAYRSL AKVHHPDASS
101: ESDGRDFMEI HKAYATLADP TTRAIYDSTL GARGRRVHAG ATGRVYPTTR RWETDQCW

Best Arabidopsis Sequence Match ( AT3G13310.1 )
(BLAST)

001: MAGTLVNSAG RFSPGNCILP QQRTARFYSG TARFPTGAPS FKASAQTLNA EPAVTESVRR RVSSLYELLK VNETASLTEI KTAYRSLAKV YHPDASESDG
101: RDFMEIHKAY ATLADPTTRA IYDSTLRVPR RRVHAGAMGR SGRVYATTRR WETDQCW

Arabidopsis Description

At3g13310 [Source:UniProtKB/TrEMBL;Acc:Q9LTT7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.