CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90458
CDY09609

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17880.1	CDX90458	AT4G17680.1	21798944
AT2G17880.1	CDY09609	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29205	Canola	plastid	92.59	94.34
Bra040872.1-P	Field mustard	plastid	80.25	81.76
CDY30342	Canola	plastid	62.96	66.23
CDX69193	Canola	plastid	64.81	64.81
AT2G17880.1	Thale cress	plastid	63.58	64.38
CDY26834	Canola	plastid	62.35	63.92
CDX75547	Canola	plastid	62.35	63.12
CDX72573	Canola	plastid	61.73	62.11
CDY24828	Canola	plastid	58.64	59.01
CDY34072	Canola	plastid	58.02	58.39
KRH69778	Soybean	mitochondrion	33.95	53.92
CDY44009	Canola	cytosol	14.2	42.59
KRH28802	Soybean	plastid	39.51	40.51
GSMUA_Achr1P18570_001	Banana	mitochondrion	33.95	39.29
KRH76655	Soybean	plastid	38.27	39.24
KRG99625	Soybean	plastid	30.25	37.12
KRH08066	Soybean	plastid	35.8	36.94
Solyc02g062160.1.1	Tomato	plastid	34.57	36.36
HORVU7Hr1G057330.1	Barley	plastid	31.48	36.17
GSMUA_Achr3P12640_001	Banana	plastid	29.63	36.09
Zm00001d053213_P001	Maize	mitochondrion, plastid	30.86	35.71
TraesCS7B01G170400.1	Wheat	plastid	30.86	35.46
PGSC0003DMT400061357	Potato	plastid	33.33	35.29
KRH38394	Soybean	plastid	30.25	35.25
VIT_03s0038g02110.t01	Wine grape	cytosol, nucleus, plastid	32.72	35.1
PGSC0003DMT400009189	Potato	plastid	30.86	34.97
TraesCS7A01G271600.1	Wheat	plastid	30.25	34.75
TraesCS4D01G226900.1	Wheat	plastid	35.8	34.32
TraesCS7D01G271900.1	Wheat	plastid	29.63	34.04
GSMUA_Achr1P02450_001	Banana	plastid	30.86	33.78
TraesCS4A01G069100.1	Wheat	plastid	34.57	33.73
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	30.25	33.56
VIT_04s0023g03470.t01	Wine grape	cytosol, plastid	41.36	33.33
KRH08065	Soybean	plastid	33.95	33.33
KRH20682	Soybean	plastid	28.4	33.33
Os06t0716100-01	Rice	plastid	27.16	33.08
Zm00001d014790_P001	Maize	plastid	26.54	33.08
KRH50148	Soybean	plastid	28.4	32.62
GSMUA_Achr5P11400_001	Banana	plastid	30.86	32.47
HORVU7Hr1G116960.1	Barley	plastid	27.16	32.35
GSMUA_Achr5P18850_001	Banana	plastid	33.95	32.16
TraesCS7B01G445600.1	Wheat	plastid	27.16	31.88
Zm00001d028404_P001	Maize	plastid	30.25	31.82
TraesCS4B01G226300.1	Wheat	plastid	32.1	31.71
Os03t0244950-00	Rice	mitochondrion, nucleus, plastid	33.33	31.58
HORVU4Hr1G063590.1	Barley	plastid	33.33	31.21
TraesCS7B01G448500.1	Wheat	plastid	24.69	31.01
Os08t0548400-00	Rice	plastid	27.78	30.82
TraesCS7A01G529400.1	Wheat	plastid	24.69	30.77
HORVU7Hr1G116890.2	Barley	plastid	26.54	30.71
Zm00001d032030_P001	Maize	plastid	25.93	30.43
TraesCS7B01G446100.1	Wheat	mitochondrion, plastid	24.07	30.23
TraesCS7A01G528900.1	Wheat	plastid	25.93	30.22
TraesCS7D01G516900.1	Wheat	plastid	25.93	30.22
TraesCS7B01G445500.1	Wheat	plastid	25.93	30.22
TraesCS7D01G516600.1	Wheat	plastid	25.93	30.22
KXG25435	Sorghum	plastid	27.78	30.2
GSMUA_Achr8P19450_001	Banana	plastid	32.72	30.11
TraesCS7A01G528700.1	Wheat	plastid	25.93	30.0
EER92566	Sorghum	plastid	29.01	29.56
TraesCS7A01G529000.1	Wheat	plastid	25.31	29.5
TraesCS7B01G445700.1	Wheat	plastid	25.31	29.5
TraesCS7B01G446000.1	Wheat	plastid	23.46	29.46
TraesCS7A01G528800.1	Wheat	plastid	24.69	29.41
TraesCS7D01G516700.1	Wheat	plastid	25.31	29.29
TraesCS7D01G517000.1	Wheat	plastid	25.31	29.29
TraesCS7B01G445800.1	Wheat	plastid	25.31	29.29
TraesCS7A01G529200.1	Wheat	plastid	25.31	29.29
TraesCS3D01G308300.1	Wheat	plastid	24.69	29.2
TraesCS7D01G516800.1	Wheat	plastid	24.69	28.57
CDY24196	Canola	plastid	27.78	28.3
CDY23588	Canola	plastid	27.16	27.33
CDX75702	Canola	plastid	26.54	26.71
CDX82546	Canola	plastid	25.93	26.58
CDY43357	Canola	plastid	25.93	26.42
EER88964	Sorghum	plastid	22.22	26.28
TraesCS4B01G226200.1	Wheat	plastid	28.4	25.7
KRH69779	Soybean	mitochondrion	29.01	23.04
TraesCS7B01G445900.1	Wheat	mitochondrion, plastid	20.99	22.22

Protein Annotations

EnsemblPlants:CDY07811	EnsemblPlantsGene:GSBRNA2T00124956001	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:IPR001623	InterPro:IPR036869
InterPro:J_dom_sf	PANTHER:PTHR44240	PANTHER:PTHR44240:SF1	PFAM:PF00226	PFscan:PS50076	PRINTS:PR00625
ProteinID:CDY07811	ProteinID:CDY07811.1	SEG:seg	SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI0004EEBBA4
UniProt:A0A078F350	MapMan:35.1	:	:	:	:

Description

BnaC03g48110DBnaC03g48110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F350]

Coordinates

chrLK031981:+:160017..160505

Molecular Weight (calculated)

17657.0 Da

IEP (calculated)

9.310

GRAVY (calculated)

-0.259

Length

162 amino acids

Sequence
(BLAST)

001: MMLSSSPTFF APPLLSSSSP PFSAVPPPPR TSQISISATT ASSYSCAEDP PRLRQIPQRL SASVTPSLYE ILEIPVGSTS QVIKSAYRRL ARICHPDVAG
101: NRRNCASSDA FMKIHAAYCT LSDPEKRAVY DRKILCGRRP LTVGVSRFGS YGGGNWETDQ CW

Best Arabidopsis Sequence Match ( AT2G17880.1 )
(BLAST)

001: MLSSSPTFFA TPFLSSSSSS SPSFSSTSPP SRISRISPSL STTTASYTCA EDLPRLRQIP QRFSATASLY EILEIPVGST SQEIKSAYRR LARICHPDVA
101: RNSRDNSSAD DFMKIHAAYC TLSDPEKRAV YDRRTLLRSR PLTAGYGSYG GRNWETDQCW

Arabidopsis Description

At2g17880 [Source:UniProtKB/TrEMBL;Acc:O48828]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.