Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDY08148 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G13310.1 | CDY08148 | AT3G49580.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82546 | Canola | plastid | 94.41 | 96.2 |
| CDY44009 | Canola | cytosol | 27.95 | 83.33 |
| CDY43357 | Canola | plastid | 70.81 | 71.7 |
| CDY24196 | Canola | plastid | 70.19 | 71.07 |
| CDY23588 | Canola | plastid | 69.57 | 69.57 |
| AT3G13310.1 | Thale cress | plastid | 60.25 | 61.78 |
| TraesCS7A01G220300.1 | Wheat | plastid | 31.06 | 45.87 |
| EER89648 | Sorghum | plastid | 29.19 | 45.63 |
| TraesCS7B01G127100.1 | Wheat | cytosol, mitochondrion | 27.95 | 45.45 |
| VIT_19s0015g01370.t01 | Wine grape | plastid | 40.37 | 43.92 |
| TraesCS7D01G221800.1 | Wheat | plastid | 29.19 | 43.12 |
| KRH14184 | Soybean | mitochondrion, plastid | 37.89 | 42.96 |
| HORVU7Hr1G045280.1 | Barley | plastid | 29.19 | 42.34 |
| GSMUA_Achr9P19770_001 | Banana | plastid | 32.3 | 40.94 |
| Solyc07g065960.1.1 | Tomato | plastid | 38.51 | 38.51 |
| PGSC0003DMT400056986 | Potato | plastid | 38.51 | 38.51 |
| KRG98415 | Soybean | plastid | 36.02 | 38.41 |
| GSMUA_Achr4P01700_001 | Banana | plastid | 30.43 | 37.98 |
| Solyc07g065970.1.1 | Tomato | mitochondrion | 37.89 | 37.2 |
| PGSC0003DMT400056985 | Potato | plastid | 36.65 | 35.98 |
| KRH46491 | Soybean | plastid | 33.54 | 34.62 |
| CDX72573 | Canola | plastid | 30.43 | 30.43 |
| CDX69193 | Canola | plastid | 29.81 | 29.63 |
| CDX75547 | Canola | plastid | 29.19 | 29.38 |
| CDY24828 | Canola | plastid | 29.19 | 29.19 |
| CDY34072 | Canola | plastid | 28.57 | 28.57 |
| CDY30342 | Canola | plastid | 27.33 | 28.57 |
| CDY29205 | Canola | plastid | 27.95 | 28.3 |
| CDY26834 | Canola | plastid | 26.71 | 27.22 |
| CDY07811 | Canola | plastid | 26.71 | 26.54 |
Protein Annotations
| Gene3D:1.10.287.110 | MapMan:35.2 | EnsemblPlants:CDX75702 | ProteinID:CDX75702 | ProteinID:CDX75702.1 | InterPro:DnaJ_domain |
| InterPro:DnaJ_domain_CS | EnsemblPlantsGene:GSBRNA2T00123607001 | InterPro:IPR001623 | InterPro:IPR036869 | InterPro:J_dom_sf | PFAM:PF00226 |
| PRINTS:PR00625 | ScanProsite:PS00636 | PFscan:PS50076 | PANTHER:PTHR44240 | PANTHER:PTHR44240:SF5 | SMART:SM00271 |
| SUPFAM:SSF46565 | UniParc:UPI0004EDFD9F | : | : | : | : |
Description
BnaC03g37850D
Coordinates
chrLK031805:-:7234..7719
Molecular Weight (calculated)
17802.8 Da
IEP (calculated)
10.539
GRAVY (calculated)
-0.662
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGTLIYSAV NSLRSSPGNS LRQPKPTRLH NGNARFPTGA TSFRASAAQT LNAEPAVTES VRRRASSLYE LLRVDETASL TEIKTAYRSL AKVHHPDASS
101: ESDGRDFMEI HKAYATLADP TTRAIYDSTL GARGRRMHAG ATGRTSRVYP MTRRWETDQC W
101: ESDGRDFMEI HKAYATLADP TTRAIYDSTL GARGRRMHAG ATGRTSRVYP MTRRWETDQC W
001: MAGTLVNSAG RFSPGNCILP QQRTARFYSG TARFPTGAPS FKASAQTLNA EPAVTESVRR RVSSLYELLK VNETASLTEI KTAYRSLAKV YHPDASESDG
101: RDFMEIHKAY ATLADPTTRA IYDSTLRVPR RRVHAGAMGR SGRVYATTRR WETDQCW
101: RDFMEIHKAY ATLADPTTRA IYDSTLRVPR RRVHAGAMGR SGRVYATTRR WETDQCW
Arabidopsis Description
At3g13310 [Source:UniProtKB/TrEMBL;Acc:Q9LTT7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.