CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90458
CDY09609

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17880.1	CDX90458	AT4G17680.1	21798944
AT2G17880.1	CDY09609	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037247.1-P	Field mustard	plastid	94.81	94.81
CDY26834	Canola	plastid	79.87	77.85
AT2G17880.1	Thale cress	plastid	71.43	68.75
CDY07811	Canola	plastid	66.23	62.96
CDY29205	Canola	plastid	64.94	62.89
CDX72573	Canola	plastid	64.29	61.49
CDX75547	Canola	plastid	63.64	61.25
CDX69193	Canola	plastid	64.29	61.11
CDY34072	Canola	plastid	61.69	59.01
KRH69778	Soybean	mitochondrion	38.31	57.84
CDY24828	Canola	plastid	60.39	57.76
KRH28802	Soybean	plastid	44.81	43.67
KRH76655	Soybean	plastid	44.16	43.04
KRH08066	Soybean	plastid	42.86	42.04
CDY44009	Canola	cytosol	14.29	40.74
Zm00001d053213_P001	Maize	mitochondrion, plastid	37.01	40.71
HORVU7Hr1G057330.1	Barley	plastid	36.36	39.72
GSMUA_Achr1P18570_001	Banana	mitochondrion	35.71	39.29
TraesCS7B01G170400.1	Wheat	plastid	35.71	39.01
GSMUA_Achr3P12640_001	Banana	plastid	33.12	38.35
Solyc02g062160.1.1	Tomato	plastid	38.31	38.31
VIT_03s0038g02110.t01	Wine grape	cytosol, nucleus, plastid	37.01	37.75
TraesCS7A01G271600.1	Wheat	plastid	34.42	37.59
KRH08065	Soybean	plastid	40.26	37.58
GSMUA_Achr1P02450_001	Banana	plastid	35.71	37.16
KRG99625	Soybean	plastid	31.82	37.12
TraesCS7D01G271900.1	Wheat	plastid	33.77	36.88
GSMUA_Achr5P11400_001	Banana	plastid	36.36	36.36
KXG25435	Sorghum	plastid	35.06	36.24
Zm00001d014790_P001	Maize	plastid	30.52	36.15
KRH38394	Soybean	plastid	32.47	35.97
GSMUA_Achr5P18850_001	Banana	plastid	39.61	35.67
Zm00001d032030_P001	Maize	plastid	31.82	35.51
PGSC0003DMT400061357	Potato	plastid	35.06	35.29
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	33.12	34.93
EER88964	Sorghum	plastid	29.87	33.58
PGSC0003DMT400009189	Potato	plastid	31.17	33.57
GSMUA_Achr8P19450_001	Banana	plastid	38.31	33.52
KRH50148	Soybean	plastid	30.52	33.33
TraesCS4B01G226300.1	Wheat	plastid	35.06	32.93
Os08t0548400-00	Rice	plastid	31.17	32.88
Os03t0244950-00	Rice	mitochondrion, nucleus, plastid	36.36	32.75
KRH20682	Soybean	plastid	29.22	32.61
VIT_04s0023g03470.t01	Wine grape	cytosol, plastid	42.21	32.34
EER92566	Sorghum	plastid	33.12	32.08
TraesCS7B01G448500.1	Wheat	plastid	26.62	31.78
TraesCS4D01G226900.1	Wheat	plastid	34.42	31.36
HORVU7Hr1G116960.1	Barley	plastid	27.27	30.88
Os06t0716100-01	Rice	plastid	26.62	30.83
Zm00001d028404_P001	Maize	plastid	30.52	30.52
TraesCS7B01G445700.1	Wheat	plastid	27.27	30.22
TraesCS7A01G529000.1	Wheat	plastid	27.27	30.22
TraesCS4A01G069100.1	Wheat	plastid	32.47	30.12
TraesCS7D01G517000.1	Wheat	plastid	27.27	30.0
CDY43357	Canola	plastid	30.52	29.56
TraesCS7A01G528900.1	Wheat	plastid	26.62	29.5
TraesCS7D01G516900.1	Wheat	plastid	26.62	29.5
TraesCS7D01G516600.1	Wheat	plastid	26.62	29.5
TraesCS7B01G445500.1	Wheat	plastid	26.62	29.5
TraesCS7B01G446100.1	Wheat	mitochondrion, plastid	24.68	29.46
TraesCS7B01G445800.1	Wheat	plastid	26.62	29.29
TraesCS7A01G529200.1	Wheat	plastid	26.62	29.29
TraesCS7B01G445600.1	Wheat	plastid	25.97	28.99
TraesCS7B01G446000.1	Wheat	plastid	24.03	28.68
HORVU7Hr1G116890.2	Barley	plastid	25.97	28.57
TraesCS7A01G528700.1	Wheat	plastid	25.97	28.57
TraesCS3D01G308300.1	Wheat	plastid	25.32	28.47
TraesCS7A01G529400.1	Wheat	plastid	24.03	28.46
CDY23588	Canola	plastid	29.22	27.95
TraesCS7D01G516700.1	Wheat	plastid	25.32	27.86
HORVU4Hr1G063590.1	Barley	plastid	31.17	27.75
CDY24196	Canola	plastid	28.57	27.67
CDX75702	Canola	plastid	28.57	27.33
CDX82546	Canola	plastid	27.92	27.22
TraesCS4B01G226200.1	Wheat	plastid	31.17	26.82
TraesCS7A01G528800.1	Wheat	plastid	23.38	26.47
TraesCS7D01G516800.1	Wheat	plastid	24.03	26.43
KRH69779	Soybean	mitochondrion	33.12	25.0
TraesCS7B01G445900.1	Wheat	mitochondrion, plastid	22.73	22.88

Protein Annotations

EnsemblPlants:CDY30342	EnsemblPlantsGene:GSBRNA2T00045025001	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:IPR001623	InterPro:IPR036869
InterPro:J_dom_sf	PANTHER:PTHR44240	PANTHER:PTHR44240:SF1	PFAM:PF00226	PFscan:PS50076	PRINTS:PR00625
ProteinID:CDY30342	ProteinID:CDY30342.1	SEG:seg	SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI0004EE8F05
UniProt:A0A078GYL1	MapMan:35.1	:	:	:	:

Description

BnaA09g09350DBnaA09g09350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GYL1]

Coordinates

chrLK032252:+:352985..353449

Molecular Weight (calculated)

16765.8 Da

IEP (calculated)

9.532

GRAVY (calculated)

-0.319

Length

154 amino acids

Sequence
(BLAST)

001: MLSSSSTFFA PPFLSSSLSP PSRTSRISPP LSATTAASSR YTCADDPPRL RPIPQRLSAA ASLYEILEIP VGSTGQEIKS AYRRLARICH PDVAGNGRSA
101: DEFVKIHAAY CTLSDPEKRA VYDRRILRRS RPLSVGVSGF GGYVGGNWET DQCW

Best Arabidopsis Sequence Match ( AT2G17880.1 )
(BLAST)

001: MLSSSPTFFA TPFLSSSSSS SPSFSSTSPP SRISRISPSL STTTASYTCA EDLPRLRQIP QRFSATASLY EILEIPVGST SQEIKSAYRR LARICHPDVA
101: RNSRDNSSAD DFMKIHAAYC TLSDPEKRAV YDRRTLLRSR PLTAGYGSYG GRNWETDQCW

Arabidopsis Description

At2g17880 [Source:UniProtKB/TrEMBL;Acc:O48828]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.