CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
golgi 1
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH04275
KRH28216
KRH57556
KRH77271

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17880.1	KRH04275	AT4G17680.1	21798944
AT2G17880.1	KRH28216	AT4G17680.1	21798944
AT2G17880.1	KRH57556	AT4G17680.1	21798944
AT2G17880.1	KRH77271	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69778	Soybean	mitochondrion	51.59	79.41
KRH29260	Soybean	cytosol	35.67	55.45
KRH24255	Soybean	cytosol	35.67	55.45
KRH08065	Soybean	plastid	56.69	53.94
KRH28802	Soybean	plastid	54.14	53.8
KRH76655	Soybean	plastid	51.59	51.27
GSMUA_Achr1P18570_001	Banana	mitochondrion	42.04	47.14
KRH38394	Soybean	plastid	38.85	43.88
VIT_03s0038g02110.t01	Wine grape	cytosol, nucleus, plastid	41.4	43.05
CDY30342	Canola	plastid	42.04	42.86
Bra017744.1-P	Field mustard	plastid	42.68	41.61
CDX72573	Canola	plastid	42.04	40.99
Solyc02g062160.1.1	Tomato	plastid	40.13	40.91
Bra037247.1-P	Field mustard	plastid	39.49	40.26
Zm00001d053213_P001	Maize	mitochondrion, plastid	35.67	40.0
CDY26834	Canola	plastid	40.13	39.87
HORVU7Hr1G057330.1	Barley	plastid	35.67	39.72
AT2G17880.1	Thale cress	plastid	40.13	39.38
CDY24828	Canola	plastid	40.13	39.13
Bra010502.1-P	Field mustard	plastid	40.13	39.13
KXG25435	Sorghum	plastid	36.94	38.93
AT4G36040.1	Thale cress	plastid	39.49	38.51
CDY29205	Canola	plastid	38.85	38.36
GSMUA_Achr5P11400_001	Banana	plastid	37.58	38.31
CDY34072	Canola	plastid	38.85	37.89
Bra011656.1-P	Field mustard	plastid	38.22	37.74
Bra040872.1-P	Field mustard	plastid	38.22	37.74
KRH20682	Soybean	plastid	33.12	37.68
CDX75547	Canola	plastid	38.22	37.5
PGSC0003DMT400061357	Potato	plastid	36.31	37.25
TraesCS7B01G170400.1	Wheat	plastid	33.12	36.88
GSMUA_Achr3P12640_001	Banana	plastid	31.21	36.84
KRH69779	Soybean	mitochondrion	47.77	36.76
Zm00001d032030_P001	Maize	plastid	31.85	36.23
TraesCS7D01G271900.1	Wheat	plastid	32.48	36.17
TraesCS7A01G271600.1	Wheat	plastid	32.48	36.17
CDX69193	Canola	plastid	36.94	35.8
CDY07811	Canola	plastid	36.94	35.8
KRG99625	Soybean	plastid	29.94	35.61
VIT_04s0023g03470.t01	Wine grape	cytosol, plastid	45.22	35.32
GSMUA_Achr1P02450_001	Banana	plastid	33.12	35.14
HORVU7Hr1G116890.2	Barley	plastid	31.21	35.0
Os08t0548400-00	Rice	plastid	32.48	34.93
KRH50148	Soybean	plastid	31.21	34.75
Zm00001d014790_P001	Maize	plastid	28.66	34.62
TraesCS7D01G516600.1	Wheat	plastid	30.57	34.53
TraesCS7B01G446100.1	Wheat	mitochondrion, plastid	28.03	34.11
TraesCS7B01G448500.1	Wheat	plastid	28.03	34.11
GSMUA_Achr8P19450_001	Banana	plastid	38.22	34.09
TraesCS7B01G445500.1	Wheat	plastid	29.94	33.81
KRH14184	Soybean	mitochondrion, plastid	30.57	33.8
TraesCS4D01G226900.1	Wheat	plastid	36.31	33.73
TraesCS7B01G445800.1	Wheat	plastid	29.94	33.57
TraesCS7A01G529200.1	Wheat	plastid	29.94	33.57
TraesCS7A01G528700.1	Wheat	plastid	29.94	33.57
GSMUA_Achr5P18850_001	Banana	plastid	36.31	33.33
Zm00001d028404_P001	Maize	plastid	32.48	33.12
TraesCS7A01G528900.1	Wheat	plastid	29.3	33.09
TraesCS7A01G529000.1	Wheat	plastid	29.3	33.09
TraesCS7D01G516900.1	Wheat	plastid	29.3	33.09
TraesCS7B01G445700.1	Wheat	plastid	29.3	33.09
HORVU7Hr1G116960.1	Barley	plastid	28.66	33.09
Os06t0716100-01	Rice	plastid	28.03	33.08
TraesCS7A01G529400.1	Wheat	plastid	27.39	33.08
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	30.57	32.88
TraesCS7D01G517000.1	Wheat	plastid	29.3	32.86
TraesCS7D01G516800.1	Wheat	plastid	29.3	32.86
TraesCS7D01G516700.1	Wheat	plastid	29.3	32.86
TraesCS7B01G446000.1	Wheat	plastid	26.75	32.56
TraesCS7A01G528800.1	Wheat	plastid	28.03	32.35
EER88964	Sorghum	plastid	28.03	32.12
TraesCS7B01G445600.1	Wheat	plastid	28.03	31.88
TraesCS3D01G308300.1	Wheat	plastid	27.39	31.39
TraesCS4A01G069100.1	Wheat	plastid	33.12	31.33
TraesCS4B01G226300.1	Wheat	plastid	32.48	31.1
EER92566	Sorghum	plastid	31.21	30.82
PGSC0003DMT400009189	Potato	plastid	28.03	30.77
KRG98415	Soybean	plastid	29.3	30.46
HORVU4Hr1G063590.1	Barley	plastid	33.12	30.06
Os03t0244950-00	Rice	mitochondrion, nucleus, plastid	32.48	29.82
KRH46491	Soybean	plastid	29.3	29.49
TraesCS4B01G226200.1	Wheat	plastid	29.94	26.26
TraesCS7B01G445900.1	Wheat	mitochondrion, plastid	25.48	26.14

Protein Annotations

EMBL:ACUP02010137	EnsemblPlants:KRH08066	EnsemblPlantsGene:GLYMA_16G127700	EntrezGene:100795760	Gene3D:1.10.287.110	InterPro:DnaJ_domain
InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	PANTHER:PTHR44240	PANTHER:PTHR44240:SF1	PFAM:PF00226
PFscan:PS50076	PRINTS:PR00625	ProteinID:KRH08066	ProteinID:KRH08066.1	SMART:SM00271	SUPFAM:SSF46565
UniParc:UPI000233B8FA	UniProt:I1MN50	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr16:-:27974774..27975479

Molecular Weight (calculated)

17554.6 Da

IEP (calculated)

9.481

GRAVY (calculated)

-0.573

Length

157 amino acids

Sequence
(BLAST)

001: MFTAPFPTST VTLSGESVTS PPRHVRFRSV VSFATATFTE EQQHKAAPYL RPHHGMALSA TLYDILGIRA TASGEEIRAA YRRLARVCHP DVAPVERKES
101: SAGEFMKIHA AYCTLSDPEK RDSYDRSLFR RQQRPVKTTS SGASGYGGRN WETDQCW

Best Arabidopsis Sequence Match ( AT4G36040.1 )
(BLAST)

001: MLSSSPTSFT HPFLSSSPPL SPISPPSRTA RISPPLVSAS CSYTYTEDSP RLHQIPRRLT TVPASLYDVL EVPLGATSQD IKSAYRRLAR ICHPDVAGTD
101: RTSSSSADEF MKIHAAYCTL SDPEKRSVYD RRMLRRSRPL TVGTSGLGSY VGRNWETDQC W

Arabidopsis Description

ATJ11At4g36040 [Source:UniProtKB/TrEMBL;Acc:Q1H544]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.