CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2
mitochondrion 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH16959
KRH53667
KRH64261

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13310.1	KRH16959	AT3G49580.1	21798944
AT3G13310.1	KRH53667	AT3G49580.1	21798944
AT3G13310.1	KRH64261	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98415	Soybean	plastid	78.85	81.46
TraesCS7B01G127100.1	Wheat	cytosol, mitochondrion	30.13	47.47
CDY44009	Canola	cytosol	16.03	46.3
HORVU7Hr1G045280.1	Barley	plastid	32.69	45.95
TraesCS7A01G220300.1	Wheat	plastid	31.41	44.95
GSMUA_Achr4P01700_001	Banana	plastid	36.54	44.19
TraesCS7D01G221800.1	Wheat	plastid	30.77	44.04
EER89648	Sorghum	plastid	28.21	42.72
KRH29260	Soybean	cytosol	26.92	41.58
KRH24255	Soybean	cytosol	26.92	41.58
VIT_19s0015g01370.t01	Wine grape	plastid	37.82	39.86
GSMUA_Achr9P19770_001	Banana	plastid	32.05	39.37
KRH69778	Soybean	mitochondrion	25.0	38.24
KRH14184	Soybean	mitochondrion, plastid	34.62	38.03
PGSC0003DMT400056986	Potato	plastid	37.82	36.65
Solyc07g065970.1.1	Tomato	mitochondrion	38.46	36.59
PGSC0003DMT400056985	Potato	plastid	37.18	35.37
Solyc07g065960.1.1	Tomato	plastid	35.9	34.78
CDY23588	Canola	plastid	35.9	34.78
CDX82546	Canola	plastid	33.97	33.54
CDX75702	Canola	plastid	34.62	33.54
Bra001497.1-P	Field mustard	plastid	33.33	32.91
CDY24196	Canola	plastid	33.33	32.7
Bra034691.1-P	Field mustard	plastid	32.69	32.08
CDY43357	Canola	plastid	32.69	32.08
Bra039384.1-P	Field mustard	plastid	32.05	31.85
AT3G13310.1	Thale cress	plastid	31.41	31.21
KRH08066	Soybean	plastid	29.49	29.3
KRH28802	Soybean	plastid	28.21	27.85
KRH76655	Soybean	plastid	28.21	27.85
KRH38394	Soybean	plastid	21.79	24.46
KRH08065	Soybean	plastid	25.64	24.24
KRG99625	Soybean	plastid	20.51	24.24
KRH50148	Soybean	plastid	21.79	24.11
KRH20682	Soybean	plastid	17.95	20.29
KRH69779	Soybean	mitochondrion	25.0	19.12

Protein Annotations

EMBL:ACUP02005347	EnsemblPlants:KRH46491	EnsemblPlantsGene:GLYMA_08G337100	EntrezGene:100798752	Gene3D:1.10.287.110	InterPro:DnaJ_domain
InterPro:DnaJ_domain_CS	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	PANTHER:PTHR45432	PFAM:PF00226
PFscan:PS50076	PRINTS:PR00625	ProteinID:KRH46491	ProteinID:KRH46491.1	ScanProsite:PS00636	SMART:SM00271
SUPFAM:SSF46565	UniParc:UPI00023390CE	UniProt:I1KYR6	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr8:+:45405418..45407147

Molecular Weight (calculated)

17314.2 Da

IEP (calculated)

9.446

GRAVY (calculated)

-0.559

Length

156 amino acids

Sequence
(BLAST)

001: MAPTLNLSAV GTPLRFSSSV DRSASFPQRN SVRAVAEEAV ETRRPAASLY DVLRVERDAS PTEIKSAYRS LAKLLHPDAA VRRSPETDGG GGYVDGDFIQ
101: LRNAYETLSD PSAKAIYDMT LAAPHGGRHR RFSTPLIRNH SSAFYTTRRW ETDQCW

Best Arabidopsis Sequence Match ( AT3G13310.1 )
(BLAST)

001: MAGTLVNSAG RFSPGNCILP QQRTARFYSG TARFPTGAPS FKASAQTLNA EPAVTESVRR RVSSLYELLK VNETASLTEI KTAYRSLAKV YHPDASESDG
101: RDFMEIHKAY ATLADPTTRA IYDSTLRVPR RRVHAGAMGR SGRVYATTRR WETDQCW

Arabidopsis Description

At3g13310 [Source:UniProtKB/TrEMBL;Acc:Q9LTT7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.