Factsheet for PGSC0003DMT400056986

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, golgi, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	golgi, nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001474
PGSC0003DMT400001475
PGSC0003DMT400001476
PGSC0003DMT400069515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13310.1	PGSC0003DMT400001474	AT3G49580.1	21798944
AT3G13310.1	PGSC0003DMT400001475	AT3G49580.1	21798944
AT3G13310.1	PGSC0003DMT400001476	AT3G49580.1	21798944
AT3G13310.1	PGSC0003DMT400069515	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g065960.1.1	Tomato	plastid	70.81	70.81
CDY44009	Canola	cytosol	17.39	51.85
TraesCS7B01G127100.1	Wheat	cytosol, mitochondrion	29.19	47.47
EER89648	Sorghum	plastid	29.81	46.6
VIT_19s0015g01370.t01	Wine grape	plastid	42.24	45.95
KRH14184	Soybean	mitochondrion, plastid	39.75	45.07
TraesCS7D01G221800.1	Wheat	plastid	29.81	44.04
TraesCS7A01G220300.1	Wheat	plastid	29.81	44.04
PGSC0003DMT400056985	Potato	plastid	44.1	43.29
HORVU7Hr1G045280.1	Barley	plastid	29.81	43.24
GSMUA_Achr9P19770_001	Banana	plastid	33.54	42.52
GSMUA_Achr4P01700_001	Banana	plastid	33.54	41.86
KRG98415	Soybean	plastid	39.13	41.72
CDY24196	Canola	plastid	39.75	40.25
CDX82546	Canola	plastid	38.51	39.24
Bra039384.1-P	Field mustard	plastid	37.89	38.85
Bra001497.1-P	Field mustard	plastid	37.89	38.61
CDY23588	Canola	plastid	38.51	38.51
CDX75702	Canola	plastid	38.51	38.51
CDY43357	Canola	plastid	37.89	38.36
KRH46491	Soybean	plastid	36.65	37.82
AT3G13310.1	Thale cress	plastid	36.65	37.58
Bra034691.1-P	Field mustard	plastid	36.65	37.11
PGSC0003DMT400025543	Potato	plastid	31.68	32.69
PGSC0003DMT400061357	Potato	plastid	29.19	30.72
PGSC0003DMT400009189	Potato	plastid	19.25	21.68

Protein Annotations

EnsemblPlants:PGSC0003DMT400056986	EnsemblPlantsGene:PGSC0003DMG400022152	EntrezGene:102599358	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:IPR001623
InterPro:IPR036869	InterPro:J_dom_sf	PANTHER:PTHR45432	PFAM:PF00226	PFscan:PS50076	PGSC:PGSC0003DMG400022152
PRINTS:PR00625	RefSeq:XP_006346096.1	SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI000296D0A5	UniProt:M1C064
MapMan:35.2	:	:	:	:	:

Description

Chaperone protein DNAj [Source:PGSC_GENE;Acc:PGSC0003DMG400022152]

Coordinates

chr7:-:55949647..55950426

Molecular Weight (calculated)

18109.5 Da

IEP (calculated)

10.152

GRAVY (calculated)

-0.440

Length

161 amino acids

Sequence
(BLAST)

001: MIQSLNLISS SPFPFSVHKS SYSAAAPVGS NRRSLFIGKS NRRGTICASA VAEAPMMMER RSVSLYEVLR VKRDASPKEI KAAYRNLAKL YHPDSASLPE
101: ESSDGRDFIE IHDAYVTLSD PSARALYDLK LSVGSRRRGF ARSVDGFRIY PTRRWETDQC W

Best Arabidopsis Sequence Match ( AT3G13310.1 )
(BLAST)

001: MAGTLVNSAG RFSPGNCILP QQRTARFYSG TARFPTGAPS FKASAQTLNA EPAVTESVRR RVSSLYELLK VNETASLTEI KTAYRSLAKV YHPDASESDG
101: RDFMEIHKAY ATLADPTTRA IYDSTLRVPR RRVHAGAMGR SGRVYATTRR WETDQCW

Arabidopsis Description

At3g13310 [Source:UniProtKB/TrEMBL;Acc:Q9LTT7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.