Factsheet for VIT_19s0015g01370.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 2
endoplasmic reticulum 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_16s0098g00600.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13310.1	VIT_16s0098g00600.t01	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G127100.1	Wheat	cytosol, mitochondrion	34.46	51.52
CDY44009	Canola	cytosol	18.24	50.0
HORVU7Hr1G045280.1	Barley	plastid	36.49	48.65
TraesCS7D01G221800.1	Wheat	plastid	35.81	48.62
EER89648	Sorghum	plastid	33.11	47.57
GSMUA_Achr9P19770_001	Banana	plastid	40.54	47.24
TraesCS7A01G220300.1	Wheat	plastid	34.46	46.79
KRH14184	Soybean	mitochondrion, plastid	41.22	42.96
PGSC0003DMT400056986	Potato	plastid	45.95	42.24
Bra034691.1-P	Field mustard	plastid	45.27	42.14
KRG98415	Soybean	plastid	42.57	41.72
Solyc07g065960.1.1	Tomato	plastid	45.27	41.61
CDX75702	Canola	plastid	43.92	40.37
CDY23588	Canola	plastid	43.92	40.37
GSMUA_Achr4P01700_001	Banana	plastid	35.14	40.31
Bra001497.1-P	Field mustard	plastid	42.57	39.87
CDX82546	Canola	plastid	42.57	39.87
CDY24196	Canola	plastid	42.57	39.62
AT3G13310.1	Thale cress	plastid	41.22	38.85
KRH46491	Soybean	plastid	39.86	37.82
Solyc07g065970.1.1	Tomato	mitochondrion	41.89	37.8
CDY43357	Canola	plastid	40.54	37.74
Bra039384.1-P	Field mustard	plastid	39.86	37.58
PGSC0003DMT400056985	Potato	plastid	41.22	37.2
VIT_03s0038g02110.t01	Wine grape	cytosol, nucleus, plastid	32.43	31.79
VIT_18s0001g14440.t01	Wine grape	plastid	33.11	22.37
VIT_04s0023g03470.t01	Wine grape	cytosol, plastid	29.73	21.89

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100265189	wikigene:100265189	MapMan:35.2	ProteinID:CBI39819	ProteinID:CBI39819.3
UniProt:D7UAQ4	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	EMBL:FN596747	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	InterPro:IPR001623	InterPro:IPR036869
InterPro:J_dom_sf	EntrezGene:LOC100265189	wikigene:LOC100265189	PFAM:PF00226	PRINTS:PR00625	ScanProsite:PS00636
PFscan:PS50076	PANTHER:PTHR45432	SMART:SM00271	SUPFAM:SSF46565	TIGR:TC59568	UniParc:UPI00015CBC7A
ArrayExpress:VIT_19s0015g01370	EnsemblPlantsGene:VIT_19s0015g01370	EnsemblPlants:VIT_19s0015g01370.t01	unigene:Vvi.781	RefSeq:XP_002275924	RefSeq:XP_002275924.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr19:+:9657864..9658472

Molecular Weight (calculated)

16344.1 Da

IEP (calculated)

9.423

GRAVY (calculated)

-0.528

Length

148 amino acids

Sequence
(BLAST)

001: MFQSLSSSFA LSSPPIHFRA GSAPSMSCSR NPCHASMQTL VEATRKPSSL YEVLRVKQTA SPTEIKTAYR SLAKMYHPDA SPVDSDGRNF IQIHNAYETL
101: SDPAARAVYD LSLGSTGRRP YAYACSSGGV RGRSAHYSTR RWETDQCW

Best Arabidopsis Sequence Match ( AT3G13310.1 )
(BLAST)

001: MAGTLVNSAG RFSPGNCILP QQRTARFYSG TARFPTGAPS FKASAQTLNA EPAVTESVRR RVSSLYELLK VNETASLTEI KTAYRSLAKV YHPDASESDG
101: RDFMEIHKAY ATLADPTTRA IYDSTLRVPR RRVHAGAMGR SGRVYATTRR WETDQCW

Arabidopsis Description

At3g13310 [Source:UniProtKB/TrEMBL;Acc:Q9LTT7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.