Factsheet for VIT_03s0038g02110.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, golgi, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	golgi, nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0012g00290.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17880.1	VIT_02s0012g00290.t01	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69778	Soybean	mitochondrion	41.06	60.78
KRH76655	Soybean	plastid	47.68	45.57
KRH28802	Soybean	plastid	46.36	44.3
GSMUA_Achr1P18570_001	Banana	mitochondrion	39.74	42.86
KRH08066	Soybean	plastid	43.05	41.4
GSMUA_Achr1P02450_001	Banana	plastid	39.74	40.54
GSMUA_Achr3P12640_001	Banana	plastid	34.44	39.1
KRG99625	Soybean	plastid	33.77	38.64
GSMUA_Achr5P11400_001	Banana	plastid	39.07	38.31
TraesCS7B01G446100.1	Wheat	mitochondrion, plastid	32.45	37.98
KRH50148	Soybean	plastid	35.1	37.59
KRH38394	Soybean	plastid	34.44	37.41
Zm00001d053213_P001	Maize	mitochondrion, plastid	34.44	37.14
CDY30342	Canola	plastid	37.75	37.01
Zm00001d014790_P001	Maize	plastid	31.79	36.92
Os06t0716100-01	Rice	plastid	32.45	36.84
TraesCS7B01G448500.1	Wheat	plastid	31.13	36.43
CDY26834	Canola	plastid	37.75	36.08
TraesCS7B01G445500.1	Wheat	plastid	33.11	35.97
KRH08065	Soybean	plastid	39.07	35.76
TraesCS7D01G516700.1	Wheat	plastid	33.11	35.71
Zm00001d028404_P001	Maize	plastid	36.42	35.71
Bra037247.1-P	Field mustard	plastid	36.42	35.71
Zm00001d032030_P001	Maize	plastid	32.45	35.51
TraesCS7D01G271900.1	Wheat	plastid	33.11	35.46
TraesCS7B01G170400.1	Wheat	plastid	33.11	35.46
HORVU7Hr1G057330.1	Barley	plastid	33.11	35.46
TraesCS7A01G271600.1	Wheat	plastid	33.11	35.46
TraesCS7A01G529400.1	Wheat	plastid	30.46	35.38
TraesCS7D01G516900.1	Wheat	plastid	32.45	35.25
TraesCS7D01G516600.1	Wheat	plastid	32.45	35.25
TraesCS7A01G529000.1	Wheat	plastid	32.45	35.25
Bra040872.1-P	Field mustard	plastid	37.09	35.22
AT2G17880.1	Thale cress	plastid	37.09	35.0
TraesCS7A01G528700.1	Wheat	plastid	32.45	35.0
KXG25435	Sorghum	plastid	34.44	34.9
TraesCS7B01G446000.1	Wheat	plastid	29.8	34.88
CDX72573	Canola	plastid	37.09	34.78
CDY29205	Canola	plastid	36.42	34.59
EER92566	Sorghum	plastid	36.42	34.59
HORVU7Hr1G116960.1	Barley	plastid	31.13	34.56
TraesCS7A01G528800.1	Wheat	plastid	31.13	34.56
TraesCS7B01G445700.1	Wheat	plastid	31.79	34.53
GSMUA_Achr5P18850_001	Banana	plastid	39.07	34.5
CDX75547	Canola	plastid	36.42	34.38
EER88964	Sorghum	plastid	31.13	34.31
TraesCS7B01G445800.1	Wheat	plastid	31.79	34.29
HORVU7Hr1G116890.2	Barley	plastid	31.79	34.29
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	33.11	34.25
Bra017744.1-P	Field mustard	plastid	36.42	34.16
TraesCS7B01G445600.1	Wheat	plastid	31.13	34.06
Bra011656.1-P	Field mustard	plastid	35.76	33.96
TraesCS7D01G516800.1	Wheat	plastid	31.13	33.57
Os08t0548400-00	Rice	plastid	32.45	33.56
CDX69193	Canola	plastid	35.76	33.33
TraesCS7A01G528900.1	Wheat	plastid	30.46	33.09
CDY34072	Canola	plastid	35.1	32.92
Bra010502.1-P	Field mustard	plastid	35.1	32.92
AT4G36040.1	Thale cress	plastid	35.1	32.92
CDY24828	Canola	plastid	35.1	32.92
TraesCS7D01G517000.1	Wheat	plastid	30.46	32.86
TraesCS7A01G529200.1	Wheat	plastid	30.46	32.86
TraesCS3D01G308300.1	Wheat	plastid	29.8	32.85
CDY07811	Canola	plastid	35.1	32.72
KRH20682	Soybean	plastid	29.8	32.61
VIT_19s0015g01370.t01	Wine grape	plastid	31.79	32.43
GSMUA_Achr8P19450_001	Banana	plastid	37.75	32.39
VIT_18s0001g14440.t01	Wine grape	plastid	45.7	31.51
VIT_04s0023g03470.t01	Wine grape	cytosol, plastid	41.72	31.34
TraesCS4B01G226300.1	Wheat	plastid	32.45	29.88
TraesCS4D01G226900.1	Wheat	plastid	33.11	29.59
Os03t0244950-00	Rice	mitochondrion, nucleus, plastid	32.45	28.66
TraesCS4A01G069100.1	Wheat	plastid	31.13	28.31
HORVU4Hr1G063590.1	Barley	plastid	31.13	27.17
KRH69779	Soybean	mitochondrion	35.1	25.98
TraesCS7B01G445900.1	Wheat	mitochondrion, plastid	25.83	25.49
TraesCS4B01G226200.1	Wheat	plastid	28.48	24.02

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100241895	wikigene:100241895	MapMan:35.1	ProteinID:CCB60629	ProteinID:CCB60629.1
InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	UniProt:F6I113	EMBL:FN596508	InterPro:IPR001623	InterPro:IPR036869
InterPro:J_dom_sf	EntrezGene:LOC100241895	wikigene:LOC100241895	PFAM:PF00226	PRINTS:PR00625	ScanProsite:PS00636
PFscan:PS50076	PANTHER:PTHR44240	PANTHER:PTHR44240:SF3	SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI000210AA7F
ArrayExpress:VIT_03s0038g02110	EnsemblPlantsGene:VIT_03s0038g02110	EnsemblPlants:VIT_03s0038g02110.t01	RefSeq:XP_002277590	RefSeq:XP_002277590.2	SEG:seg

Description

No Description!

Coordinates

chr3:+:1449330..1451521

Molecular Weight (calculated)

17258.7 Da

IEP (calculated)

10.177

GRAVY (calculated)

-0.591

Length

151 amino acids

Sequence
(BLAST)

001: MASSSSLYEV LGIPVSASGN EIKAAYRRLA RVCHPDVVAM NQKETSANEF MKIHAAYSTL SDPDKRANYD QDLFRRRRPV MATAMRTGGS SFSGFSRRTW
101: ETDQCWNRCM KINKKEYTDP FKLLLNGKND WFLFVKIKPI VQMPKPDPSP T

Best Arabidopsis Sequence Match ( AT2G17880.1 )
(BLAST)

001: MLSSSPTFFA TPFLSSSSSS SPSFSSTSPP SRISRISPSL STTTASYTCA EDLPRLRQIP QRFSATASLY EILEIPVGST SQEIKSAYRR LARICHPDVA
101: RNSRDNSSAD DFMKIHAAYC TLSDPEKRAV YDRRTLLRSR PLTAGYGSYG GRNWETDQCW

Arabidopsis Description

At2g17880 [Source:UniProtKB/TrEMBL;Acc:O48828]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.