Factsheet for Zm00001d032030_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d017649_P001
Zm00001d029988_P001
Zm00001d047069_P001
Zm00001d051484_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17880.1	Zm00001d017649_P001	AT4G17680.1	21798944
AT2G17880.1	Zm00001d029988_P001	AT4G17680.1	21798944
AT2G17880.1	Zm00001d047069_P001	AT4G17680.1	21798944
AT2G17880.1	Zm00001d051484_P001	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053213_P001	Maize	mitochondrion, plastid	55.07	54.29
KXG25435	Sorghum	plastid	54.35	50.34
KRH69778	Soybean	mitochondrion	36.23	49.02
TraesCS7A01G271600.1	Wheat	plastid	50.0	48.94
TraesCS7D01G271900.1	Wheat	plastid	49.28	48.23
TraesCS7B01G170400.1	Wheat	plastid	48.55	47.52
HORVU7Hr1G057330.1	Barley	plastid	48.55	47.52
Os08t0548400-00	Rice	plastid	47.1	44.52
Zm00001d014790_P001	Maize	plastid	39.13	41.54
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	40.58	38.36
Zm00001d028404_P001	Maize	plastid	36.96	33.12
VIT_03s0038g02110.t01	Wine grape	cytosol, nucleus, plastid	35.51	32.45
PGSC0003DMT400061357	Potato	plastid	35.51	32.03
KRH08066	Soybean	plastid	36.23	31.85
CDY30342	Canola	plastid	35.51	31.82
KRH76655	Soybean	plastid	36.23	31.65
Bra037247.1-P	Field mustard	plastid	34.06	30.52
CDY26834	Canola	plastid	34.78	30.38
KRH28802	Soybean	plastid	34.78	30.38
Solyc02g062160.1.1	Tomato	plastid	33.33	29.87
Bra017744.1-P	Field mustard	plastid	34.78	29.81
AT2G17880.1	Thale cress	plastid	34.06	29.38
CDX72573	Canola	plastid	34.06	29.19
Bra011656.1-P	Field mustard	plastid	33.33	28.93
CDX75547	Canola	plastid	33.33	28.75
AT4G36040.1	Thale cress	plastid	33.33	28.57
KRH08065	Soybean	plastid	34.06	28.48
Bra040872.1-P	Field mustard	plastid	32.61	28.3
CDX69193	Canola	plastid	32.61	27.78
CDY29205	Canola	plastid	31.88	27.67
KRH50148	Soybean	plastid	28.26	27.66
CDY24828	Canola	plastid	31.88	27.33
Bra010502.1-P	Field mustard	plastid	31.88	27.33
CDY34072	Canola	plastid	31.16	26.71
CDY07811	Canola	plastid	30.43	25.93
KRH38394	Soybean	plastid	26.09	25.9
KRG99625	Soybean	plastid	24.64	25.76
VIT_04s0023g03470.t01	Wine grape	cytosol, plastid	36.96	25.37
PGSC0003DMT400009189	Potato	plastid	26.09	25.17
KRH20682	Soybean	plastid	23.19	23.19
KRH69779	Soybean	mitochondrion	30.43	20.59

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100278133	MapMan:35.2	UniProt:B6U488	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS
EMBL:EU972053	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	ProteinID:ONM04267.1	PFAM:PF00226
PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PANTHER:PTHR44240	PANTHER:PTHR44240:SF2	SMART:SM00271
SUPFAM:SSF46565	UniParc:UPI000182F3BE	EnsemblPlantsGene:Zm00001d032030	EnsemblPlants:Zm00001d032030_P001	EnsemblPlants:Zm00001d032030_T001	SEG:seg

Description

Chaperone protein dnaJ 11 chloroplastic

Coordinates

chr1:-:209949067..209949613

Molecular Weight (calculated)

14678.3 Da

IEP (calculated)

10.799

GRAVY (calculated)

-0.430

Length

138 amino acids

Sequence
(BLAST)

001: MISAPLRVPA PKAAAGGSFL LGASSVESNP NPKPSRIRCA AATLYEVLGL RAGATGREIK AAYRRLARER HPDVAHAPGA AAEFARLHDA YATLSDPDSR
101: ARYDGGGAAP AAAVARRPWS GAVYGRPRRR TWETDQCW

Best Arabidopsis Sequence Match ( AT2G17880.1 )
(BLAST)

001: MLSSSPTFFA TPFLSSSSSS SPSFSSTSPP SRISRISPSL STTTASYTCA EDLPRLRQIP QRFSATASLY EILEIPVGST SQEIKSAYRR LARICHPDVA
101: RNSRDNSSAD DFMKIHAAYC TLSDPEKRAV YDRRTLLRSR PLTAGYGSYG GRNWETDQCW

Arabidopsis Description

At2g17880 [Source:UniProtKB/TrEMBL;Acc:O48828]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.