Factsheet for GSMUA_AchrUn_randomP07470_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
cytosol 2
endoplasmic reticulum 1
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P00560_001
GSMUA_Achr2P12040_001
GSMUA_Achr2P18250_001
GSMUA_Achr4P21690_001
GSMUA_Achr4P30100_001
GSMUA_Achr8P14860_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17880.1	GSMUA_Achr1P00560_001	AT4G17680.1	21798944
AT2G17880.1	GSMUA_Achr2P12040_001	AT4G17680.1	21798944
AT2G17880.1	GSMUA_Achr2P18250_001	AT4G17680.1	21798944
AT2G17880.1	GSMUA_Achr4P21690_001	AT4G17680.1	21798944
AT2G17880.1	GSMUA_Achr4P30100_001	AT4G17680.1	21798944
AT2G17880.1	GSMUA_Achr8P14860_001	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P12640_001	Banana	plastid	43.84	48.12
KRH69778	Soybean	mitochondrion	33.56	48.04
TraesCS7B01G446100.1	Wheat	mitochondrion, plastid	39.73	44.96
Zm00001d014790_P001	Maize	plastid	39.73	44.62
TraesCS7A01G529400.1	Wheat	plastid	39.04	43.85
Os08t0548400-00	Rice	plastid	43.84	43.84
EER88964	Sorghum	plastid	40.41	43.07
HORVU7Hr1G116960.1	Barley	plastid	39.73	42.65
TraesCS7B01G446000.1	Wheat	plastid	37.67	42.64
TraesCS7D01G516900.1	Wheat	plastid	39.73	41.73
GSMUA_Achr1P18570_001	Banana	mitochondrion	39.73	41.43
TraesCS7B01G445600.1	Wheat	plastid	39.04	41.3
GSMUA_Achr1P02450_001	Banana	plastid	41.78	41.22
TraesCS7B01G448500.1	Wheat	plastid	36.3	41.09
TraesCS7A01G529000.1	Wheat	plastid	39.04	41.01
TraesCS7D01G516600.1	Wheat	plastid	39.04	41.01
TraesCS7D01G517000.1	Wheat	plastid	39.04	40.71
Os06t0716100-01	Rice	plastid	36.99	40.6
Zm00001d032030_P001	Maize	plastid	38.36	40.58
TraesCS7B01G445500.1	Wheat	plastid	38.36	40.29
TraesCS7A01G528900.1	Wheat	plastid	38.36	40.29
TraesCS3D01G308300.1	Wheat	plastid	37.67	40.15
TraesCS7B01G445800.1	Wheat	plastid	38.36	40.0
TraesCS7D01G516800.1	Wheat	plastid	38.36	40.0
TraesCS7A01G529200.1	Wheat	plastid	38.36	40.0
TraesCS7A01G528700.1	Wheat	plastid	37.67	39.29
TraesCS7D01G516700.1	Wheat	plastid	37.67	39.29
TraesCS7A01G528800.1	Wheat	plastid	36.3	38.97
TraesCS7B01G170400.1	Wheat	plastid	36.99	38.3
TraesCS7B01G445700.1	Wheat	plastid	36.3	38.13
HORVU7Hr1G057330.1	Barley	plastid	36.3	37.59
HORVU7Hr1G116890.2	Barley	plastid	35.62	37.14
TraesCS7D01G271900.1	Wheat	plastid	35.62	36.88
TraesCS7A01G271600.1	Wheat	plastid	35.62	36.88
Zm00001d053213_P001	Maize	mitochondrion, plastid	34.93	36.43
KXG25435	Sorghum	plastid	35.62	34.9
KRG99625	Soybean	plastid	30.82	34.09
GSMUA_Achr5P11400_001	Banana	plastid	35.62	33.77
CDX72573	Canola	plastid	36.99	33.54
GSMUA_Achr5P18850_001	Banana	plastid	39.04	33.33
CDX75547	Canola	plastid	36.3	33.12
CDY30342	Canola	plastid	34.93	33.12
VIT_03s0038g02110.t01	Wine grape	cytosol, nucleus, plastid	34.25	33.11
AT4G36040.1	Thale cress	plastid	36.3	32.92
PGSC0003DMT400061357	Potato	plastid	34.25	32.68
AT2G17880.1	Thale cress	plastid	35.62	32.5
Bra017744.1-P	Field mustard	plastid	35.62	32.3
KRH76655	Soybean	plastid	34.93	32.28
CDX69193	Canola	plastid	35.62	32.1
GSMUA_Achr8P19450_001	Banana	plastid	38.36	31.82
KRH28802	Soybean	plastid	34.25	31.65
Bra011656.1-P	Field mustard	plastid	34.25	31.45
KRH50148	Soybean	plastid	30.14	31.21
Solyc02g062160.1.1	Tomato	plastid	32.88	31.17
Bra037247.1-P	Field mustard	plastid	32.88	31.17
CDY34072	Canola	plastid	34.25	31.06
CDY24828	Canola	plastid	34.25	31.06
Bra010502.1-P	Field mustard	plastid	34.25	31.06
CDY26834	Canola	plastid	33.56	31.01
KRH08066	Soybean	plastid	32.88	30.57
CDY07811	Canola	plastid	33.56	30.25
KRH38394	Soybean	plastid	28.77	30.22
Bra040872.1-P	Field mustard	plastid	32.88	30.19
CDY29205	Canola	plastid	32.19	29.56
GSMUA_Achr4P01700_001	Banana	plastid	26.03	29.46
TraesCS7B01G445900.1	Wheat	mitochondrion, plastid	30.82	29.41
GSMUA_Achr9P19770_001	Banana	plastid	25.34	29.13
VIT_04s0023g03470.t01	Wine grape	cytosol, plastid	36.99	26.87
KRH08065	Soybean	plastid	30.14	26.67
KRH20682	Soybean	plastid	24.66	26.09
PGSC0003DMT400009189	Potato	plastid	25.34	25.87
KRH69779	Soybean	mitochondrion	29.45	21.08

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP07470_001	EnsemblPlants:GSMUA_AchrUn_randomT07470_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG07470_001	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS
InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	PANTHER:PTHR44240	PANTHER:PTHR44240:SF2	PFAM:PF00226
PFscan:PS50076	PRINTS:PR00625	ScanProsite:PS00636	SEG:seg	SMART:SM00271	SUPFAM:SSF46565
UniParc:UPI0002966647	UniProt:M0U758	MapMan:35.1	:	:	:

Description

heat shock protein DnaJ, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG07470_001]

Coordinates

chrchrUn_random:+:32336368..32336808

Molecular Weight (calculated)

16084.0 Da

IEP (calculated)

9.368

GRAVY (calculated)

-0.464

Length

146 amino acids

Sequence
(BLAST)

001: MISSPSLAAP RSHLRFPPRL PSSSSCRRRL LLPPRCASAS PPVPASEATL YDVLGVPTGA TGGEIKVAYR RLARECHPDV AAATESSDEF IRLHAAYATL
101: SDPEKRAEYD QRVMAATANA AAGRRWSPRL SYSCRPCRRW ETDQCW

Best Arabidopsis Sequence Match ( AT2G17880.1 )
(BLAST)

001: MLSSSPTFFA TPFLSSSSSS SPSFSSTSPP SRISRISPSL STTTASYTCA EDLPRLRQIP QRFSATASLY EILEIPVGST SQEIKSAYRR LARICHPDVA
101: RNSRDNSSAD DFMKIHAAYC TLSDPEKRAV YDRRTLLRSR PLTAGYGSYG GRNWETDQCW

Arabidopsis Description

At2g17880 [Source:UniProtKB/TrEMBL;Acc:O48828]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.