Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P12040_001 | Banana | plastid | 52.47 | 63.2 |
| GSMUA_Achr1P00560_001 | Banana | nucleus | 50.62 | 56.75 |
| GSMUA_Achr2P18250_001 | Banana | nucleus | 56.79 | 55.76 |
| GSMUA_Achr4P30100_001 | Banana | plastid | 51.85 | 55.08 |
| GSMUA_Achr8P14860_001 | Banana | nucleus | 55.56 | 53.41 |
| Os02t0687500-01 | Rice | cytosol, nucleus, plastid | 45.06 | 45.91 |
| Zm00001d017649_P001 | Maize | plastid | 43.83 | 42.9 |
| Zm00001d047069_P001 | Maize | cytosol | 43.21 | 42.17 |
| Bra024967.1-P | Field mustard | plastid | 31.79 | 41.7 |
| Os10t0565500-01 | Rice | nucleus | 45.06 | 41.6 |
| TraesCS1A01G215300.1 | Wheat | cytosol | 41.36 | 41.36 |
| TraesCS1D01G217800.1 | Wheat | cytosol | 40.74 | 41.12 |
| Zm00001d029988_P001 | Maize | cytosol, mitochondrion, nucleus | 42.59 | 41.07 |
| KRH77271 | Soybean | plastid | 40.74 | 40.99 |
| VIT_02s0012g00290.t01 | Wine grape | cytosol, nucleus, plastid | 42.59 | 40.95 |
| HORVU1Hr1G054930.3 | Barley | cytosol | 41.36 | 40.85 |
| EES05709 | Sorghum | nucleus | 44.44 | 40.79 |
| KRH28216 | Soybean | nucleus | 41.36 | 40.73 |
| TraesCS6D01G243000.1 | Wheat | cytosol | 41.98 | 40.72 |
| HORVU6Hr1G066640.4 | Barley | nucleus | 42.9 | 40.52 |
| KXG38894 | Sorghum | cytosol, mitochondrion, nucleus | 43.52 | 40.52 |
| TraesCS1B01G228800.1 | Wheat | cytosol | 40.74 | 40.49 |
| TraesCS6B01G289500.1 | Wheat | nucleus | 41.98 | 40.24 |
| TraesCS6A01G262200.1 | Wheat | nucleus | 41.67 | 39.71 |
| Zm00001d051484_P001 | Maize | nucleus, plastid | 42.28 | 38.81 |
| Solyc06g061020.2.1 | Tomato | nucleus | 39.51 | 38.67 |
| KRH04275 | Soybean | nucleus | 41.67 | 37.82 |
| KRH57556 | Soybean | nucleus | 40.74 | 37.71 |
| Solyc08g077460.2.1 | Tomato | nucleus | 40.12 | 37.36 |
| PGSC0003DMT400004642 | Potato | nucleus | 39.81 | 37.28 |
| CDY33511 | Canola | nucleus | 34.26 | 36.63 |
| CDX77733 | Canola | nucleus | 33.64 | 36.33 |
| PGSC0003DMT400068387 | Potato | nucleus | 38.27 | 36.26 |
| Solyc08g007120.2.1 | Tomato | nucleus | 36.73 | 35.95 |
| AT5G47050.1 | Thale cress | nucleus | 33.02 | 35.67 |
| CDY09609 | Canola | cytosol | 26.54 | 34.82 |
| AT1G32740.1 | Thale cress | nucleus | 33.33 | 34.62 |
| Bra017511.1-P | Field mustard | nucleus | 31.48 | 33.77 |
| CDY43447 | Canola | nucleus | 31.48 | 33.77 |
| PGSC0003DMT400052841 | Potato | nucleus | 35.19 | 32.66 |
| CDY37172 | Canola | cytosol | 30.25 | 32.45 |
| CDY51856 | Canola | cytosol | 30.25 | 32.34 |
| CDY03162 | Canola | cytosol | 31.79 | 31.99 |
| GSMUA_Achr4P23050_001 | Banana | nucleus | 18.52 | 31.91 |
| CDX90458 | Canola | cytosol | 28.7 | 30.59 |
| GSMUA_Achr7P00850_001 | Banana | plastid | 21.6 | 30.43 |
| AT4G17680.1 | Thale cress | nucleus | 29.01 | 29.94 |
| GSMUA_Achr4P28300_001 | Banana | nucleus | 22.22 | 29.88 |
| GSMUA_Achr2P21330_001 | Banana | nucleus | 25.0 | 28.22 |
| GSMUA_Achr10P... | Banana | cytosol, extracellular, nucleus, plastid | 25.0 | 28.12 |
| GSMUA_Achr5P02100_001 | Banana | plastid | 20.68 | 27.46 |
| GSMUA_Achr6P11810_001 | Banana | nucleus | 25.0 | 26.64 |
| GSMUA_Achr10P... | Banana | nucleus | 25.93 | 26.42 |
| Bra012650.1-P | Field mustard | nucleus | 27.47 | 25.5 |
| Bra022093.1-P | Field mustard | nucleus | 17.28 | 25.45 |
| GSMUA_Achr2P13160_001 | Banana | plastid | 19.14 | 25.1 |
| GSMUA_Achr4P32070_001 | Banana | nucleus | 21.6 | 24.48 |
| GSMUA_Achr11P... | Banana | nucleus | 24.07 | 24.45 |
| GSMUA_Achr6P16260_001 | Banana | nucleus | 25.0 | 24.04 |
| GSMUA_Achr10P... | Banana | nucleus | 21.91 | 22.33 |
| GSMUA_Achr6P08300_001 | Banana | plastid | 23.77 | 22.25 |
| GSMUA_Achr6P31690_001 | Banana | nucleus | 20.06 | 21.81 |
| GSMUA_Achr6P10180_001 | Banana | plastid | 22.53 | 21.04 |
| GSMUA_Achr9P09830_001 | Banana | nucleus | 19.14 | 19.31 |
| GSMUA_Achr11P... | Banana | nucleus | 22.22 | 19.25 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P21690_001 | EnsemblPlants:GSMUA_Achr4T21690_001 | EnsemblPlantsGene:GSMUA_Achr4G21690_001 | Gene3D:3.30.40.10 | InterPro:E3ligase_BOI_like | InterPro:IPR001841 |
| InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR42647 | PANTHER:PTHR42647:SF13 |
| PFscan:PS50089 | PIRSF:PIRSF036836 | SEG:seg | UniParc:UPI000294B2B2 | UniProt:M0SQY2 | MapMan:35.2 |
Description
Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G21690_001]
Coordinates
chr4:-:22099477..22100604
Molecular Weight (calculated)
35494.0 Da
IEP (calculated)
8.507
GRAVY (calculated)
-0.524
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MQKGAGEERD GVCSAGRDWL PRPVGGARDR RRWRWACWLA ANGNAQKRSR EAAGIPLAPP PQQQNHPVSL ISLQAQPCSP ALVNLAPQHQ IHQPSLLTTC
101: LGLASEDKQH HRSPKQFNLF SSSPASSSSC SSLFSSELAA QINHQNNEIE QFLLAKGEQL RRALAERRQR HYRALLSAAE KSAARRLREK EAEVEREARR
201: RAELEDRLGR LRTESMAWQA KAMADQTTAA ALHAQLQQAV AARPPPAAGG ECGDPPTAED AESAYVDPNR VEHEVACRTC RWRRASVVLL PCRHLCLCDA
301: CEAAAELCPV CACARAGSVG VFLS
101: LGLASEDKQH HRSPKQFNLF SSSPASSSSC SSLFSSELAA QINHQNNEIE QFLLAKGEQL RRALAERRQR HYRALLSAAE KSAARRLREK EAEVEREARR
201: RAELEDRLGR LRTESMAWQA KAMADQTTAA ALHAQLQQAV AARPPPAAGG ECGDPPTAED AESAYVDPNR VEHEVACRTC RWRRASVVLL PCRHLCLCDA
301: CEAAAELCPV CACARAGSVG VFLS
001: MAVQAHHHPS TLFFLNNGQE GNDQPHKSQF HSINAGVDTR KRAREVSSVI DLDITAAPMN PPPQTPPQVI GRRQNPNVVS TGLRLSREQS QNQEQRFLSF
101: PITGDVAGEI KSQTDELNRF LQIQGEQLKR MLAENSERNY RELLRTTEES VRRRLREKEA EIEKATRRHV ELEARATQIE TEARAWQMRA AAREAEATSL
201: QAQLHQAVVV AHGGGVITTV EPQSGSVDGV DEAEDAESAY VDPDRVEMIG PGCRICRRRS ATVLALPCRH LVMCTECDGS VRICPLCLST KNSSVEVFYS
101: PITGDVAGEI KSQTDELNRF LQIQGEQLKR MLAENSERNY RELLRTTEES VRRRLREKEA EIEKATRRHV ELEARATQIE TEARAWQMRA AAREAEATSL
201: QAQLHQAVVV AHGGGVITTV EPQSGSVDGV DEAEDAESAY VDPDRVEMIG PGCRICRRRS ATVLALPCRH LVMCTECDGS VRICPLCLST KNSSVEVFYS
Arabidopsis Description
SBP (S-ribonuclease binding protein) family protein [Source:UniProtKB/TrEMBL;Acc:Q9FJQ8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.