Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d017649_P001 | Maize | plastid | 75.47 | 72.51 |
| EES05709 | Sorghum | nucleus | 78.3 | 70.54 |
| TraesCS6D01G243000.1 | Wheat | cytosol | 73.9 | 70.36 |
| TraesCS6B01G289500.1 | Wheat | nucleus | 74.21 | 69.82 |
| TraesCS6A01G262200.1 | Wheat | nucleus | 73.58 | 68.82 |
| HORVU6Hr1G066640.4 | Barley | nucleus | 73.27 | 67.93 |
| Zm00001d051484_P001 | Maize | nucleus, plastid | 70.75 | 63.74 |
| GSMUA_Achr1P00560_001 | Banana | nucleus | 44.03 | 48.44 |
| GSMUA_Achr4P21690_001 | Banana | nucleus | 45.91 | 45.06 |
| GSMUA_Achr2P12040_001 | Banana | plastid | 38.05 | 44.98 |
| GSMUA_Achr2P18250_001 | Banana | nucleus | 45.28 | 43.64 |
| GSMUA_Achr4P30100_001 | Banana | plastid | 40.88 | 42.62 |
| GSMUA_Achr8P14860_001 | Banana | nucleus | 44.97 | 42.43 |
| Bra024967.1-P | Field mustard | plastid | 32.39 | 41.7 |
| CDY09609 | Canola | cytosol | 31.13 | 40.08 |
| Os10t0565500-01 | Rice | nucleus | 44.03 | 39.89 |
| VIT_02s0012g00290.t01 | Wine grape | cytosol, nucleus, plastid | 41.51 | 39.17 |
| CDX77733 | Canola | nucleus | 34.91 | 37.0 |
| CDY33511 | Canola | nucleus | 35.22 | 36.96 |
| KRH77271 | Soybean | plastid | 37.42 | 36.96 |
| Solyc06g061020.2.1 | Tomato | nucleus | 38.05 | 36.56 |
| Solyc08g077460.2.1 | Tomato | nucleus | 39.62 | 36.21 |
| PGSC0003DMT400004642 | Potato | nucleus | 39.31 | 36.13 |
| CDY43447 | Canola | nucleus | 34.28 | 36.09 |
| Bra017511.1-P | Field mustard | nucleus | 34.28 | 36.09 |
| AT1G32740.1 | Thale cress | nucleus | 35.22 | 35.9 |
| KRH28216 | Soybean | nucleus | 36.79 | 35.56 |
| CDX90458 | Canola | cytosol | 33.96 | 35.53 |
| AT4G17680.1 | Thale cress | nucleus | 34.91 | 35.35 |
| AT5G47050.1 | Thale cress | nucleus | 33.33 | 35.33 |
| PGSC0003DMT400068387 | Potato | nucleus | 37.74 | 35.09 |
| KRH04275 | Soybean | nucleus | 38.68 | 34.45 |
| Solyc08g007120.2.1 | Tomato | nucleus | 35.85 | 34.44 |
| CDY03162 | Canola | cytosol | 34.59 | 34.16 |
| CDY37172 | Canola | cytosol | 32.39 | 34.11 |
| KRH57556 | Soybean | nucleus | 36.79 | 33.43 |
| CDY51856 | Canola | cytosol | 31.45 | 33.0 |
| PGSC0003DMT400052841 | Potato | nucleus | 33.65 | 30.66 |
| Bra022093.1-P | Field mustard | nucleus | 21.07 | 30.45 |
| Bra012650.1-P | Field mustard | nucleus | 32.7 | 29.8 |
| Os04t0402500-00 | Rice | cytosol | 25.16 | 25.32 |
| Os04t0403200-01 | Rice | nucleus | 24.84 | 22.77 |
| Os11t0542100-01 | Rice | cytosol | 22.64 | 22.02 |
| Os02t0130300-02 | Rice | cytosol, nucleus, plastid | 23.58 | 21.87 |
| Os03t0263800-01 | Rice | nucleus, plastid | 22.64 | 21.05 |
| Os02t0246101-00 | Rice | cytosol | 8.49 | 15.61 |
| Os11t0543100-01 | Rice | cytosol | 6.6 | 10.55 |
Protein Annotations
| EnsemblPlants:Os02t0687500-01 | EnsemblPlantsGene:Os02g0687500 | Gene3D:3.30.40.10 | InterPro:E3ligase_BOI_like | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR42647 | PANTHER:PTHR42647:SF5 | PFAM:PF13920 |
| PFscan:PS50089 | PIRSF:PIRSF036836 | ProteinID:BAS80346.1 | SEG:seg | UniParc:UPI000393AABF | UniProt:A0A0P0VN40 |
| MapMan:35.2 | : | : | : | : | : |
Description
Similar to S-ribonuclease binding protein SBP1. (Os02t0687500-01)
Coordinates
chr2:-:28160301..28161779
Molecular Weight (calculated)
34677.3 Da
IEP (calculated)
8.725
GRAVY (calculated)
-0.428
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLPRPQMFA GVSPEVYFPS GGASGINRRN KRSREAIAMA PPPAKEELVN LFTLQPQQST SFVNMAQLHN RVSASPSRAP AALVSTGLRL ALDEQQQQQQ
101: QQQESKRLKA LCYSSSPMPF VSFSDELAGQ MKRQDEELDR FIKEQGEQLR RAMADRVRRH NRALLVAAER SAARRLREKA LEAEREARRG AELEERLARL
201: RSEAAAWQAK ALSEQAAAVS LHAQLQQAAA AARASGDELR GGEAGPAESS SSAYVDPRRS GSDRACLTCR LRPATVVLLP CRHLSLCGDC FAAGDVDVAM
301: ACPVCHCVRT GGVEAILC
101: QQQESKRLKA LCYSSSPMPF VSFSDELAGQ MKRQDEELDR FIKEQGEQLR RAMADRVRRH NRALLVAAER SAARRLREKA LEAEREARRG AELEERLARL
201: RSEAAAWQAK ALSEQAAAVS LHAQLQQAAA AARASGDELR GGEAGPAESS SSAYVDPRRS GSDRACLTCR LRPATVVLLP CRHLSLCGDC FAAGDVDVAM
301: ACPVCHCVRT GGVEAILC
001: MPLLSDNERI GLFSDSSMAI QAQHPSRFFF NNSNGQEASD CSLQPQDTPF TNFTKAGVDS RKRSREVYSS ALMNPPPPKP SQVIDITELL QKTPNVVSTG
101: LRLFHDQSQN QQQFFSSLPG DVTGKIKRQR DELDRFIQTQ GEELRRTLAD NRERRYVELL CAAEEIVGRK LRKKEAELEK ATRRHAELEA RVAHIVEEAR
201: NWQLRAATRE AEVSSLHAHL QQAIANRLDT AAKQSTFGED GGDAEEAEDA ESVYVDPERI ELIGPSCRIC RRKSATVMAL PCQHLILCNG CDVGAVRVCP
301: ICLAVKTSGV EVLF
101: LRLFHDQSQN QQQFFSSLPG DVTGKIKRQR DELDRFIQTQ GEELRRTLAD NRERRYVELL CAAEEIVGRK LRKKEAELEK ATRRHAELEA RVAHIVEEAR
201: NWQLRAATRE AEVSSLHAHL QQAIANRLDT AAKQSTFGED GGDAEEAEDA ESVYVDPERI ELIGPSCRIC RRKSATVMAL PCQHLILCNG CDVGAVRVCP
301: ICLAVKTSGV EVLF
Arabidopsis Description
SBP (S-ribonuclease binding protein) family protein [Source:UniProtKB/TrEMBL;Acc:Q8L7G9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.