Factsheet for Os02t0130300-02

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG29382	Sorghum	cytosol, mitochondrion, peroxisome, plastid	68.22	64.11
TraesCSU01G113400.1	Wheat	nucleus	63.56	62.11
TraesCS6B01G118100.1	Wheat	cytosol, nucleus, plastid	62.97	61.89
TraesCS6A01G084400.1	Wheat	cytosol, nucleus, plastid	61.52	60.11
Zm00001d015130_P001	Maize	cytosol, nucleus, plastid	59.18	57.02
HORVU6Hr1G015410.5	Barley	cytosol, mitochondrion, nucleus	61.22	56.91
KRH74575	Soybean	cytosol	39.94	40.65
KRH69583	Soybean	nucleus	39.94	40.65
CDY34127	Canola	extracellular	7.0	40.0
VIT_01s0127g00360.t01	Wine grape	nucleus	37.61	36.54
PGSC0003DMT400035059	Potato	nucleus	34.99	36.14
CDY24542	Canola	nucleus	33.53	35.17
Bra031495.1-P	Field mustard	nucleus	33.53	35.17
AT1G10650.1	Thale cress	nucleus	34.69	35.1
Bra019910.1-P	Field mustard	nucleus, plastid	30.9	34.87
Solyc05g005210.2.1	Tomato	nucleus	33.82	34.73
CDX93396	Canola	cytosol	33.24	33.93
AT1G60610.4	Thale cress	nucleus	33.53	33.82
CDY20963	Canola	nucleus	33.24	33.73
Bra018428.1-P	Field mustard	nucleus	33.24	33.73
CDY37958	Canola	cytosol, plastid	33.24	33.63
CDY20611	Canola	nucleus	33.24	33.43
Os03t0263800-01	Rice	nucleus, plastid	28.28	28.36
Os02t0687500-01	Rice	cytosol, nucleus, plastid	21.87	23.58
Os04t0402500-00	Rice	cytosol	21.57	23.42
Os10t0565500-01	Rice	nucleus	21.57	21.08
Os04t0403200-01	Rice	nucleus	20.7	20.46
Os11t0542100-01	Rice	cytosol	19.24	20.18
Os02t0246101-00	Rice	cytosol	8.16	16.18
Os11t0543100-01	Rice	cytosol	7.29	12.56

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:4328190	EMBL:AK102708	ProteinID:BAD07737.1	ProteinID:BAF07698.1
ProteinID:BAS76806.1	ncoils:Coil	InterPro:E3ligase_BOI_like	ProteinID:EAZ21614.1	EMBL:EU847010	InterPro:IPR001841
InterPro:IPR013083	EnsemblPlantsGene:Os02g0130300	EnsemblPlants:Os02t0130300-02	PFAM:PF13920	PIRSF:PIRSF036836	PFscan:PS50089
PANTHER:PTHR42647	PANTHER:PTHR42647:SF9	UniProt:Q6ZGA0	UniParc:UPI00002367C3	RefSeq:XP_015627613.1	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

Hypothetical conserved gene. (Os02t0130300-01);S-ribonuclease binding protein, SBP1, pollen domain containing protein. (Os02t0130300-02);Hypothetical conserved gene. (Os02t0130300-03)

Coordinates

chr2:-:1575930..1579154

Molecular Weight (calculated)

37680.9 Da

IEP (calculated)

5.924

GRAVY (calculated)

-0.300

Length

343 amino acids

Sequence
(BLAST)

001: MDGEMFGSGH WGGSFPYASI PKESQFVFDA KASPLQLQLF GSAAVPAVGS TGYYNYIANN HLSAMNQERN TNNDVGHEKQ LNLQMSLNYF PVENLDRLAR
101: IGNPSAVSTG LRLSYENNEH TSITSGSGNM SSLPIMASFV DEVMAELDKE NKEFNCYFGL QVEQLVKCMK DVKQRQMVEF LASLERGVGK KLKEKELEVE
201: AMNRKSKELN EQIRQVALEV QSWQSVALHN QSVANSMKSK LMQMVAHSSN LTREGSGDSE VDNTASSQNV NAVPGVFFQS GLLGINSMAD GGLGACRLCR
301: MKEAAVLVMP CRHLCLCADC EKNADVCPVC RFPKSCSVEI NMS

Best Arabidopsis Sequence Match ( AT1G60610.3 )
(BLAST)

001: MLGGNNDNPV PQVLMNDSQF RYQSNTSLNQ LHLLGTMRAG CTIDPVNYFA NDNLAPMMRL NSTRGRETEN NNIMQRQQKL QISLNYNYNN NNTVVQDEVP
101: KQNLVSTGLR LSYDDDERNS SVTSANGSIT TPVYQSLGDN IRLDLNRQND ELDQFIKFRA DQMAKGVRDI KQRHVTSFVT ALEKDVSKKL QEKDHEIESM
201: NKKNRELVDK IKQVAVEAQN WHYKAKYNES VVNALKVNLQ QVMSHGNDNN AVGGGVADHH QMKEGFGDSE IDDEAASYNY LNIPGMPSTG MRCKLCNVKN
301: VSVLLVPCRH LSLCKDCDVF TGVCPVCQSL KTSSVQVFFF

Arabidopsis Description

At1g60610 [Source:UniProtKB/TrEMBL;Acc:Q4TU35]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.