Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER95135 | Sorghum | plastid | 93.27 | 94.66 |
| Zm00001d047856_P001 | Maize | nucleus, plastid | 89.47 | 93.01 |
| Zm00001d028532_P001 | Maize | nucleus, plastid | 91.52 | 92.88 |
| TraesCS4B01G215100.1 | Wheat | plastid | 91.81 | 92.63 |
| TraesCS4D01G215600.1 | Wheat | plastid | 91.52 | 92.33 |
| TraesCS4A01G089200.1 | Wheat | plastid | 90.35 | 91.15 |
| HORVU4Hr1G061210.1 | Barley | cytosol | 91.23 | 75.54 |
| GSMUA_Achr10P... | Banana | nucleus | 59.36 | 63.84 |
| GSMUA_Achr6P10180_001 | Banana | plastid | 64.62 | 63.69 |
| Bra040255.1-P | Field mustard | nucleus | 38.6 | 57.64 |
| GSMUA_Achr11P... | Banana | nucleus | 61.99 | 56.68 |
| KRH05668 | Soybean | nucleus | 54.09 | 54.09 |
| Solyc04g078760.2.1 | Tomato | nucleus | 51.75 | 52.37 |
| KRH15376 | Soybean | nucleus, plastid | 52.34 | 51.0 |
| VIT_18s0001g10370.t01 | Wine grape | nucleus | 48.54 | 50.61 |
| CDY06767 | Canola | cytosol | 43.86 | 49.34 |
| CDY17103 | Canola | cytosol | 42.4 | 48.99 |
| AT1G45976.1 | Thale cress | cytosol | 45.61 | 48.0 |
| CDY40841 | Canola | cytosol | 41.52 | 47.49 |
| PGSC0003DMT400020551 | Potato | nucleus | 51.46 | 47.06 |
| CDY17048 | Canola | cytosol | 42.69 | 46.95 |
| Bra014051.1-P | Field mustard | nucleus | 42.4 | 46.62 |
| Os02t0130300-02 | Rice | cytosol, nucleus, plastid | 28.36 | 28.28 |
| Os02t0687500-01 | Rice | cytosol, nucleus, plastid | 21.05 | 22.64 |
| Os04t0402500-00 | Rice | cytosol | 20.18 | 21.84 |
| Os04t0403200-01 | Rice | nucleus | 21.64 | 21.33 |
| Os10t0565500-01 | Rice | nucleus | 20.47 | 19.94 |
| Os11t0542100-01 | Rice | cytosol | 18.13 | 18.96 |
| Os02t0246101-00 | Rice | cytosol | 9.06 | 17.92 |
| Os11t0543100-01 | Rice | cytosol | 5.56 | 9.55 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:4332337 | ProteinID:AAP06861.1 | ProteinID:ABF95115.1 | EMBL:AK061795 |
| EMBL:AK099103 | ProteinID:BAF11551.1 | ProteinID:BAS83384.1 | ncoils:Coil | InterPro:E3ligase_BOI_like | ProteinID:EEE58746.1 |
| InterPro:IPR001841 | InterPro:IPR013083 | EnsemblPlantsGene:Os03g0263800 | EnsemblPlants:Os03t0263800-01 | PFAM:PF13920 | PIRSF:PIRSF036836 |
| PFscan:PS50089 | PANTHER:PTHR42647 | PANTHER:PTHR42647:SF10 | UniProt:Q84Q87 | UniParc:UPI000018DC03 | RefSeq:XP_015633063.1 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
S-ribonuclease binding protein, SBP1, pollen domain containing protein. (Os03t0263800-01);S-ribonuclease binding protein, SBP1, pollen domain containing protein. (Os03t0263800-02)
Coordinates
chr3:+:8673598..8676464
Molecular Weight (calculated)
37681.9 Da
IEP (calculated)
5.434
GRAVY (calculated)
-0.491
Length
342 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFFSHHHLQ QPHPQAPPPP PPQQQQQPVP PSFRNALPVP VDGQIPAPLP FFNPPPAFQD QPAQPPLVDA MGLTAAAGLG WRQPREQELL GENSQMSSID
101: FLQTGSAVST GLALSLEDRR HGGGSGAGAG NSSGDSPLLL LPMLDDDISR EVQRLDADMD RFIKAQSERL RQSILEKVQA KQFEALASVE DKILRKIRDK
201: EAEVENINKR NSELEDQIKQ LAVEVGAWQQ RAKYNESMIN ALKYNLEQVC AHQSKDFKEG CGDSEVDDTA SCCNGGAANL QLMPKENRHS KDLTACRVCK
301: SSEACMLLLP CRHLCLCKEC ESKLSFCPLC QSSKILGMEI YM
101: FLQTGSAVST GLALSLEDRR HGGGSGAGAG NSSGDSPLLL LPMLDDDISR EVQRLDADMD RFIKAQSERL RQSILEKVQA KQFEALASVE DKILRKIRDK
201: EAEVENINKR NSELEDQIKQ LAVEVGAWQQ RAKYNESMIN ALKYNLEQVC AHQSKDFKEG CGDSEVDDTA SCCNGGAANL QLMPKENRHS KDLTACRVCK
301: SSEACMLLLP CRHLCLCKEC ESKLSFCPLC QSSKILGMEI YM
001: MALHPHLQDS KNFRDFCGID GQISPELGFN RSENLHDQSQ HPPYIPPFHV AGFAPGPVVQ IDGSDGGNGA DFEWNYGLGL EPRRERIKEQ DFLENNSQIS
101: SIDFLQARSV STGLGLSLDN ARVASSDGSA LLSLVGDDID RELQRQDADI DRFLKIQGDQ LRHAILDKIK RGQQKTVSLM EEKVVQKLRE KDEELERINR
201: KNKELEVRME QLTMEAEAWQ QRAKYNENMI AALNYNLDRA QGRPRDSIEG CGDSEVDDTA SCFNGRDNSN NNTKTMMMCR FCGVREMCML LLPCNHMCLC
301: KECERKLSSC PLCQSSKFLG MEVYM
101: SIDFLQARSV STGLGLSLDN ARVASSDGSA LLSLVGDDID RELQRQDADI DRFLKIQGDQ LRHAILDKIK RGQQKTVSLM EEKVVQKLRE KDEELERINR
201: KNKELEVRME QLTMEAEAWQ QRAKYNENMI AALNYNLDRA QGRPRDSIEG CGDSEVDDTA SCFNGRDNSN NNTKTMMMCR FCGVREMCML LLPCNHMCLC
301: KECERKLSSC PLCQSSKFLG MEVYM
Arabidopsis Description
SBP1SBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178WK23]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.