Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G215100.1 | Wheat | plastid | 99.7 | 99.7 |
| TraesCS4A01G089200.1 | Wheat | plastid | 96.46 | 96.46 |
| Os03t0263800-01 | Rice | nucleus, plastid | 92.33 | 91.52 |
| EER95135 | Sorghum | plastid | 88.5 | 89.02 |
| Zm00001d028532_P001 | Maize | nucleus, plastid | 87.61 | 88.13 |
| Zm00001d047856_P001 | Maize | nucleus, plastid | 85.25 | 87.84 |
| HORVU4Hr1G061210.1 | Barley | cytosol | 97.35 | 79.9 |
| GSMUA_Achr10P... | Banana | nucleus | 59.59 | 63.52 |
| GSMUA_Achr6P10180_001 | Banana | plastid | 64.6 | 63.11 |
| Bra040255.1-P | Field mustard | nucleus | 37.46 | 55.46 |
| GSMUA_Achr11P... | Banana | nucleus | 61.06 | 55.35 |
| KRH05668 | Soybean | nucleus | 52.21 | 51.75 |
| Solyc04g078760.2.1 | Tomato | nucleus | 50.74 | 50.89 |
| VIT_18s0001g10370.t01 | Wine grape | nucleus | 47.79 | 49.39 |
| KRH15376 | Soybean | nucleus, plastid | 50.74 | 49.0 |
| CDY17103 | Canola | cytosol | 41.59 | 47.64 |
| CDY06767 | Canola | cytosol | 42.48 | 47.37 |
| AT1G45976.1 | Thale cress | cytosol | 44.84 | 46.77 |
| PGSC0003DMT400020551 | Potato | nucleus | 50.44 | 45.72 |
| CDY40841 | Canola | cytosol | 40.12 | 45.48 |
| CDY17048 | Canola | cytosol | 41.3 | 45.02 |
| Bra014051.1-P | Field mustard | nucleus | 41.0 | 44.69 |
| TraesCS2D01G287900.1 | Wheat | cytosol | 22.42 | 23.75 |
| TraesCS2D01G288000.1 | Wheat | cytosol | 21.83 | 22.91 |
| TraesCS1D01G217800.1 | Wheat | cytosol | 18.58 | 19.63 |
| TraesCS6D01G243000.1 | Wheat | cytosol | 19.17 | 19.46 |
| TraesCS6D01G110700.1 | Wheat | nucleus | 14.75 | 19.01 |
| TraesCS6D01G073600.1 | Wheat | cytosol, nucleus, plastid | 14.75 | 18.45 |
| TraesCS7D01G431300.1 | Wheat | mitochondrion | 16.22 | 17.57 |
| TraesCS3D01G441300.1 | Wheat | mitochondrion | 14.75 | 17.24 |
| TraesCS7D01G431200.1 | Wheat | mitochondrion | 15.63 | 17.21 |
| TraesCS3D01G441000.1 | Wheat | mitochondrion | 14.45 | 16.9 |
| TraesCS7D01G431100.1 | Wheat | mitochondrion, nucleus | 15.63 | 16.88 |
| TraesCS4D01G018100.1 | Wheat | mitochondrion, nucleus | 15.04 | 16.83 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G215600.1 | EnsemblPlantsGene:TraesCS4D01G215600 | Gene3D:3.30.40.10 | InterPro:E3ligase_BOI_like | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR42647 | PANTHER:PTHR42647:SF10 | PFAM:PF13920 |
| PFscan:PS50089 | PIRSF:PIRSF036836 | SEG:seg | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr4D:-:369258197..369262954
Molecular Weight (calculated)
37234.4 Da
IEP (calculated)
5.425
GRAVY (calculated)
-0.440
Length
339 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFFSHHHLQ QPHPAAPPPQ QQQQQPAPLS FRNALAVPVD GQIPAPLAFF NAPPAFPDQA GQPQIVDAAG LTAAAGMGWR QPREQELLGE NSQMSSIDFL
101: QTGSAVSTGL ALSLEDRRHG GGGAGAGNSS GDSPLLLLPM LDDDISREVQ RLDADMDRFI RAQSERMRQS ILEKVQAKQF EALASVEDKI LRKIRDKESE
201: VQNINKRNLE LEDQIKQMAG EVGAWQQRAK YNESMISALK YNLEQVCAHQ SKDFKEGCGD SEVDDTASCC NGGAVNLQLM PKENNHPKDL TACRVCKSSE
301: ACMLLLPCRH LCLCKECESK LSFCPLCQSS KILGMEIYM
101: QTGSAVSTGL ALSLEDRRHG GGGAGAGNSS GDSPLLLLPM LDDDISREVQ RLDADMDRFI RAQSERMRQS ILEKVQAKQF EALASVEDKI LRKIRDKESE
201: VQNINKRNLE LEDQIKQMAG EVGAWQQRAK YNESMISALK YNLEQVCAHQ SKDFKEGCGD SEVDDTASCC NGGAVNLQLM PKENNHPKDL TACRVCKSSE
301: ACMLLLPCRH LCLCKECESK LSFCPLCQSS KILGMEIYM
001: MALHPHLQDS KNFRDFCGID GQISPELGFN RSENLHDQSQ HPPYIPPFHV AGFAPGPVVQ IDGSDGGNGA DFEWNYGLGL EPRRERIKEQ DFLENNSQIS
101: SIDFLQARSV STGLGLSLDN ARVASSDGSA LLSLVGDDID RELQRQDADI DRFLKIQGDQ LRHAILDKIK RGQQKTVSLM EEKVVQKLRE KDEELERINR
201: KNKELEVRME QLTMEAEAWQ QRAKYNENMI AALNYNLDRA QGRPRDSIEG CGDSEVDDTA SCFNGRDNSN NNTKTMMMCR FCGVREMCML LLPCNHMCLC
301: KECERKLSSC PLCQSSKFLG MEVYM
101: SIDFLQARSV STGLGLSLDN ARVASSDGSA LLSLVGDDID RELQRQDADI DRFLKIQGDQ LRHAILDKIK RGQQKTVSLM EEKVVQKLRE KDEELERINR
201: KNKELEVRME QLTMEAEAWQ QRAKYNENMI AALNYNLDRA QGRPRDSIEG CGDSEVDDTA SCFNGRDNSN NNTKTMMMCR FCGVREMCML LLPCNHMCLC
301: KECERKLSSC PLCQSSKFLG MEVYM
Arabidopsis Description
SBP1SBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178WK23]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.