Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G215100.1 | Wheat | plastid | 80.15 | 97.64 |
| TraesCS4D01G215600.1 | Wheat | plastid | 79.9 | 97.35 |
| TraesCS4A01G089200.1 | Wheat | plastid | 77.97 | 94.99 |
| Os03t0263800-01 | Rice | nucleus, plastid | 75.54 | 91.23 |
| EER95135 | Sorghum | plastid | 72.64 | 89.02 |
| Zm00001d028532_P001 | Maize | nucleus, plastid | 71.91 | 88.13 |
| Zm00001d047856_P001 | Maize | nucleus, plastid | 69.98 | 87.84 |
| GSMUA_Achr10P... | Banana | nucleus | 48.18 | 62.58 |
| GSMUA_Achr6P10180_001 | Banana | plastid | 52.54 | 62.54 |
| GSMUA_Achr11P... | Banana | nucleus | 54.0 | 59.63 |
| Bra040255.1-P | Field mustard | nucleus | 30.99 | 55.9 |
| KRH05668 | Soybean | nucleus | 42.86 | 51.75 |
| Solyc04g078760.2.1 | Tomato | nucleus | 41.65 | 50.89 |
| VIT_18s0001g10370.t01 | Wine grape | nucleus | 38.98 | 49.09 |
| KRH15376 | Soybean | nucleus, plastid | 41.65 | 49.0 |
| CDY17103 | Canola | cytosol | 34.38 | 47.97 |
| CDY06767 | Canola | cytosol | 35.11 | 47.7 |
| AT1G45976.1 | Thale cress | cytosol | 37.29 | 47.38 |
| CDY40841 | Canola | cytosol | 33.41 | 46.15 |
| PGSC0003DMT400020551 | Potato | nucleus | 41.65 | 45.99 |
| CDY17048 | Canola | cytosol | 34.38 | 45.66 |
| Bra014051.1-P | Field mustard | nucleus | 34.14 | 45.34 |
| HORVU6Hr1G015410.5 | Barley | cytosol, mitochondrion, nucleus | 23.49 | 26.29 |
| HORVU1Hr1G054930.3 | Barley | cytosol | 15.98 | 20.12 |
| HORVU7Hr1G100540.2 | Barley | mitochondrion | 14.29 | 19.41 |
| HORVU6Hr1G066640.4 | Barley | nucleus | 15.5 | 18.66 |
| HORVU6Hr1G021960.1 | Barley | plastid | 11.62 | 18.39 |
| HORVU6Hr1G021880.1 | Barley | plastid | 11.62 | 18.39 |
| HORVU7Hr1G100520.1 | Barley | cytosol, mitochondrion | 12.83 | 17.26 |
| HORVU4Hr1G003180.3 | Barley | mitochondrion | 12.59 | 16.94 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G061210.1 | EnsemblPlantsGene:HORVU4Hr1G061210 | Gene3D:3.30.40.10 | InterPro:E3ligase_BOI_like | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR42647 | PANTHER:PTHR42647:SF10 | PFAM:PF13920 |
| PFscan:PS50089 | PIRSF:PIRSF036836 | SEG:seg | UniParc:UPI000B4712F9 | UniProt:A0A287PBD1 | MapMan:35.1 |
Description
No Description!
Coordinates
chrchr4H:+:514440648..514445246
Molecular Weight (calculated)
45376.3 Da
IEP (calculated)
7.078
GRAVY (calculated)
-0.423
Length
413 amino acids
Sequence
(BLAST)
(BLAST)
001: TKSISKSNEA RGIQKYPTDL WVSRCMAPHV NRTSTSIKPK SHYLPALSTE PHSAFSLLPF RRGDLPLSPL AHLPLAMAFF SHHHLQQPHP AAPPPPQQQQ
101: PAPLSFRNAL PVPVDGQIPA PLAFFNAPPA FPDQAGQPQL DAAGLTAAAG MGWRQPREQE LLGENSQMSS IDFLQTGSAV STGLALSLED RRHGGGGAGA
201: GNSSGDSPLL LLPMLDDDIS REVQRLDADM DRFIRAQSER LRQSILEKVQ AKQFEALASV EDKILRKIRD KESEVQNINK RNLELEDQIK QMSGEVGAWQ
301: QRAKYNESMI SALKYNLEQV CAHQSKDFKE GCGDSEVDDT ASCCNGGAVN LQLMPKANNH PKDLMACRVC KSSEACMLLL PCRHLCLCKE CESKLSFCPL
401: CQSSKILGME IYM
101: PAPLSFRNAL PVPVDGQIPA PLAFFNAPPA FPDQAGQPQL DAAGLTAAAG MGWRQPREQE LLGENSQMSS IDFLQTGSAV STGLALSLED RRHGGGGAGA
201: GNSSGDSPLL LLPMLDDDIS REVQRLDADM DRFIRAQSER LRQSILEKVQ AKQFEALASV EDKILRKIRD KESEVQNINK RNLELEDQIK QMSGEVGAWQ
301: QRAKYNESMI SALKYNLEQV CAHQSKDFKE GCGDSEVDDT ASCCNGGAVN LQLMPKANNH PKDLMACRVC KSSEACMLLL PCRHLCLCKE CESKLSFCPL
401: CQSSKILGME IYM
001: MALHPHLQDS KNFRDFCGID GQISPELGFN RSENLHDQSQ HPPYIPPFHV AGFAPGPVVQ IDGSDGGNGA DFEWNYGLGL EPRRERIKEQ DFLENNSQIS
101: SIDFLQARSV STGLGLSLDN ARVASSDGSA LLSLVGDDID RELQRQDADI DRFLKIQGDQ LRHAILDKIK RGQQKTVSLM EEKVVQKLRE KDEELERINR
201: KNKELEVRME QLTMEAEAWQ QRAKYNENMI AALNYNLDRA QGRPRDSIEG CGDSEVDDTA SCFNGRDNSN NNTKTMMMCR FCGVREMCML LLPCNHMCLC
301: KECERKLSSC PLCQSSKFLG MEVYM
101: SIDFLQARSV STGLGLSLDN ARVASSDGSA LLSLVGDDID RELQRQDADI DRFLKIQGDQ LRHAILDKIK RGQQKTVSLM EEKVVQKLRE KDEELERINR
201: KNKELEVRME QLTMEAEAWQ QRAKYNENMI AALNYNLDRA QGRPRDSIEG CGDSEVDDTA SCFNGRDNSN NNTKTMMMCR FCGVREMCML LLPCNHMCLC
301: KECERKLSSC PLCQSSKFLG MEVYM
Arabidopsis Description
SBP1SBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178WK23]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.