Factsheet for Zm00001d028532_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

plastid 4
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95135	Sorghum	plastid	96.44	96.44
Zm00001d047856_P001	Maize	nucleus, plastid	92.88	95.14
Os03t0263800-01	Rice	nucleus, plastid	92.88	91.52
TraesCS4B01G215100.1	Wheat	plastid	88.43	87.91
TraesCS4D01G215600.1	Wheat	plastid	88.13	87.61
TraesCS4A01G089200.1	Wheat	plastid	87.24	86.73
HORVU4Hr1G061210.1	Barley	cytosol	88.13	71.91
GSMUA_Achr10P...	Banana	nucleus	57.86	61.32
GSMUA_Achr6P10180_001	Banana	plastid	62.91	61.1
Bra040255.1-P	Field mustard	nucleus	37.39	55.02
GSMUA_Achr11P...	Banana	nucleus	60.24	54.28
Solyc04g078760.2.1	Tomato	nucleus	51.34	51.18
KRH05668	Soybean	nucleus	51.93	51.17
KRH15376	Soybean	nucleus, plastid	51.04	49.0
VIT_18s0001g10370.t01	Wine grape	nucleus	46.59	47.87
CDY06767	Canola	cytosol	42.14	46.71
CDY17103	Canola	cytosol	40.95	46.62
PGSC0003DMT400020551	Potato	nucleus	51.34	46.26
AT1G45976.1	Thale cress	cytosol	44.51	46.15
CDY40841	Canola	cytosol	40.65	45.82
CDY17048	Canola	cytosol	41.84	45.34
Bra014051.1-P	Field mustard	nucleus	41.54	45.02
Zm00001d015130_P001	Maize	cytosol, nucleus, plastid	25.82	24.44
Zm00001d026161_P001	Maize	cytosol	9.79	23.4
Zm00001d010503_P001	Maize	cytosol, mitochondrion	8.9	23.26
Zm00001d047069_P001	Maize	cytosol	20.77	21.08
Zm00001d052640_P001	Maize	cytosol, extracellular, nucleus	18.4	20.95
Zm00001d025310_P001	Maize	cytosol	19.88	20.87
Zm00001d016648_P001	Maize	cytosol	18.99	20.65
Zm00001d003852_P001	Maize	cytosol, nucleus, plastid	20.18	20.61
Zm00001d017649_P001	Maize	plastid	20.18	20.54
Zm00001d029988_P001	Maize	cytosol, mitochondrion, nucleus	20.47	20.54
Zm00001d051484_P001	Maize	nucleus, plastid	21.36	20.4
Zm00001d052639_P001	Maize	extracellular	19.88	19.82
Zm00001d013571_P001	Maize	cytosol, nucleus, plastid	19.29	19.7
Zm00001d003850_P001	Maize	extracellular	19.29	19.46
Zm00001d004743_P001	Maize	plastid	9.5	19.39
Zm00001d025319_P001	Maize	cytosol	17.51	19.09
Zm00001d033419_P001	Maize	plastid	13.06	15.71
Zm00001d003613_P002	Maize	nucleus	11.57	8.99

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	UniProt:B6TK55	ncoils:Coil	InterPro:E3ligase_BOI_like	EMBL:EU965370
InterPro:IPR001841	InterPro:IPR013083	ProteinID:ONL96275.1	PFAM:PF13920	PIRSF:PIRSF036836	PFscan:PS50089
PANTHER:PTHR42647	PANTHER:PTHR42647:SF10	UniParc:UPI000182D336	EnsemblPlantsGene:Zm00001d028532	EnsemblPlants:Zm00001d028532_P001	EnsemblPlants:Zm00001d028532_T001
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

CONSTANS interacting protein 4

Coordinates

chr1:+:38393485..38403506

Molecular Weight (calculated)

37278.4 Da

IEP (calculated)

5.650

GRAVY (calculated)

-0.445

Length

337 amino acids

Sequence
(BLAST)

001: MAFFSHHHLQ QPHPQQAPPP NQQQPVLPSF RNALPVPVDG QIPAPLTFFN PPPAFPEQPA QTTLVDAVGL TAAAGLGWRQ PREQELLGEN SQMSSIDFLQ
101: TGSAVSTGLA LSLEDRRHGG GGAGNSSGDS PLLLLPMLDD DISREVQRLD ADMDRFIKAQ SERLRQSILE KVQAKQFEAL ASVEDKIFRK IRDKEAEVET
201: INKRNSELED QIKHLGVEVG AWQQRAKYNE SLINALKYNL EQVCAHQSKD FKEGCGDSEV DDTASCPYGG AVNLQLMPKE NRQPKNLTAC RVCKSSEACM
301: LLLPCRHLCL CKECESKLSI CPLCQSSKIL GMEIYYA

Best Arabidopsis Sequence Match ( AT1G45976.1 )
(BLAST)

001: MALHPHLQDS KNFRDFCGID GQISPELGFN RSENLHDQSQ HPPYIPPFHV AGFAPGPVVQ IDGSDGGNGA DFEWNYGLGL EPRRERIKEQ DFLENNSQIS
101: SIDFLQARSV STGLGLSLDN ARVASSDGSA LLSLVGDDID RELQRQDADI DRFLKIQGDQ LRHAILDKIK RGQQKTVSLM EEKVVQKLRE KDEELERINR
201: KNKELEVRME QLTMEAEAWQ QRAKYNENMI AALNYNLDRA QGRPRDSIEG CGDSEVDDTA SCFNGRDNSN NNTKTMMMCR FCGVREMCML LLPCNHMCLC
301: KECERKLSSC PLCQSSKFLG MEVYM

Arabidopsis Description

SBP1SBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178WK23]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.