Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P10180_001 | Banana | plastid | 83.65 | 76.66 |
| GSMUA_Achr11P... | Banana | nucleus | 71.7 | 60.96 |
| TraesCS4B01G215100.1 | Wheat | plastid | 63.52 | 59.59 |
| TraesCS4D01G215600.1 | Wheat | plastid | 63.52 | 59.59 |
| Os03t0263800-01 | Rice | nucleus, plastid | 63.84 | 59.36 |
| EER95135 | Sorghum | plastid | 62.58 | 59.05 |
| TraesCS4A01G089200.1 | Wheat | plastid | 62.89 | 59.0 |
| Zm00001d047856_P001 | Maize | nucleus, plastid | 60.69 | 58.66 |
| Zm00001d028532_P001 | Maize | nucleus, plastid | 61.32 | 57.86 |
| Bra040255.1-P | Field mustard | nucleus | 40.57 | 56.33 |
| KRH05668 | Soybean | nucleus | 57.23 | 53.22 |
| VIT_18s0001g10370.t01 | Wine grape | nucleus | 54.4 | 52.74 |
| AT1G45976.1 | Thale cress | cytosol | 53.14 | 52.0 |
| KRH15376 | Soybean | nucleus, plastid | 57.23 | 51.85 |
| Solyc04g078760.2.1 | Tomato | nucleus | 55.03 | 51.78 |
| CDY40841 | Canola | cytosol | 48.11 | 51.17 |
| CDY17103 | Canola | cytosol | 46.54 | 50.0 |
| CDY06767 | Canola | cytosol | 47.48 | 49.67 |
| CDY17048 | Canola | cytosol | 47.17 | 48.23 |
| HORVU4Hr1G061210.1 | Barley | cytosol | 62.58 | 48.18 |
| Bra014051.1-P | Field mustard | nucleus | 46.86 | 47.91 |
| PGSC0003DMT400020551 | Potato | nucleus | 54.72 | 46.52 |
| GSMUA_Achr4P23050_001 | Banana | nucleus | 18.87 | 31.91 |
| GSMUA_Achr7P00850_001 | Banana | plastid | 21.7 | 30.0 |
| GSMUA_Achr2P13160_001 | Banana | plastid | 22.96 | 29.55 |
| GSMUA_Achr10P... | Banana | nucleus | 27.99 | 27.99 |
| GSMUA_Achr10P... | Banana | cytosol, extracellular, nucleus, plastid | 24.84 | 27.43 |
| GSMUA_Achr2P21330_001 | Banana | nucleus | 24.53 | 27.18 |
| GSMUA_Achr5P02100_001 | Banana | plastid | 20.44 | 26.64 |
| GSMUA_Achr6P11810_001 | Banana | nucleus | 25.16 | 26.32 |
| GSMUA_Achr11P... | Banana | nucleus | 26.1 | 26.02 |
| GSMUA_Achr4P32070_001 | Banana | nucleus | 22.96 | 25.52 |
| GSMUA_Achr6P16260_001 | Banana | nucleus | 26.1 | 24.63 |
| GSMUA_Achr4P28300_001 | Banana | nucleus | 18.55 | 24.48 |
| GSMUA_Achr2P12040_001 | Banana | plastid | 19.81 | 23.42 |
| GSMUA_Achr6P31690_001 | Banana | nucleus | 20.75 | 22.15 |
| GSMUA_Achr4P21690_001 | Banana | nucleus | 22.33 | 21.91 |
| GSMUA_Achr9P09830_001 | Banana | nucleus | 22.01 | 21.81 |
| GSMUA_Achr2P18250_001 | Banana | nucleus | 22.33 | 21.52 |
| GSMUA_Achr4P30100_001 | Banana | plastid | 20.44 | 21.31 |
| GSMUA_Achr1P00560_001 | Banana | nucleus | 18.87 | 20.76 |
| GSMUA_Achr6P08300_001 | Banana | plastid | 22.01 | 20.23 |
| GSMUA_Achr8P14860_001 | Banana | nucleus | 20.75 | 19.58 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P19430_001 | EnsemblPlants:GSMUA_Achr10T19430_001 | EnsemblPlantsGene:GSMUA_Achr10G19430_001 | Gene3D:3.30.40.10 | InterPro:E3ligase_BOI_like | InterPro:IPR001841 |
| InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR42647 | PANTHER:PTHR42647:SF10 |
| PFAM:PF13920 | PFscan:PS50089 | PIRSF:PIRSF036836 | SEG:seg | UniParc:UPI0002950F0F | UniProt:M0RJL8 |
| MapMan:35.1 | : | : | : | : | : |
Description
S-RNase-binding protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G19430_001]
Coordinates
chr10:-:25818228..25822004
Molecular Weight (calculated)
35473.6 Da
IEP (calculated)
4.955
GRAVY (calculated)
-0.431
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRPNSCRNF VPIDGQISAP IDLAAAAAFP DPSCNPPSPA RFPVVRVMGL TPGAVPAADG GSSGWEPRRK RLKEQDLLEN SQISSIDFLH AGSVSTGLGL
101: SLDDRRVAAS SGESPLVLLP TVGEDIDCEV QRMDAEMDRF IKLEGERMRK SILEKVQMKQ FQTLASVEEK IFRKIREKES EVEGINKKNL ELEEQMKQLA
201: MEVSTWQQRA KYNESMINSL KYNLEQLYAQ SKDNKEGCGD NGVDDTASCC NGDTDLQLTF KQNKDIESMA CKVCRVNETC MLLLPCRHLC LCKECESKLS
301: FCPLCHSSKF IGMEIYMP
101: SLDDRRVAAS SGESPLVLLP TVGEDIDCEV QRMDAEMDRF IKLEGERMRK SILEKVQMKQ FQTLASVEEK IFRKIREKES EVEGINKKNL ELEEQMKQLA
201: MEVSTWQQRA KYNESMINSL KYNLEQLYAQ SKDNKEGCGD NGVDDTASCC NGDTDLQLTF KQNKDIESMA CKVCRVNETC MLLLPCRHLC LCKECESKLS
301: FCPLCHSSKF IGMEIYMP
001: MALHPHLQDS KNFRDFCGID GQISPELGFN RSENLHDQSQ HPPYIPPFHV AGFAPGPVVQ IDGSDGGNGA DFEWNYGLGL EPRRERIKEQ DFLENNSQIS
101: SIDFLQARSV STGLGLSLDN ARVASSDGSA LLSLVGDDID RELQRQDADI DRFLKIQGDQ LRHAILDKIK RGQQKTVSLM EEKVVQKLRE KDEELERINR
201: KNKELEVRME QLTMEAEAWQ QRAKYNENMI AALNYNLDRA QGRPRDSIEG CGDSEVDDTA SCFNGRDNSN NNTKTMMMCR FCGVREMCML LLPCNHMCLC
301: KECERKLSSC PLCQSSKFLG MEVYM
101: SIDFLQARSV STGLGLSLDN ARVASSDGSA LLSLVGDDID RELQRQDADI DRFLKIQGDQ LRHAILDKIK RGQQKTVSLM EEKVVQKLRE KDEELERINR
201: KNKELEVRME QLTMEAEAWQ QRAKYNENMI AALNYNLDRA QGRPRDSIEG CGDSEVDDTA SCFNGRDNSN NNTKTMMMCR FCGVREMCML LLPCNHMCLC
301: KECERKLSSC PLCQSSKFLG MEVYM
Arabidopsis Description
SBP1SBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178WK23]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.