Subcellular Localization
min:
: max
Winner_takes_all: plastid, extracellular, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
- plastid 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P11810_001 | Banana | nucleus | 70.49 | 66.78 |
| GSMUA_Achr2P21330_001 | Banana | nucleus | 58.68 | 58.88 |
| GSMUA_Achr11P... | Banana | nucleus | 56.94 | 51.41 |
| GSMUA_Achr10P... | Banana | nucleus | 54.51 | 49.37 |
| GSMUA_Achr6P16260_001 | Banana | nucleus | 52.08 | 44.51 |
| GSMUA_Achr6P08300_001 | Banana | plastid | 44.44 | 36.99 |
| GSMUA_Achr4P23050_001 | Banana | nucleus | 23.61 | 36.17 |
| GSMUA_Achr7P00850_001 | Banana | plastid | 27.08 | 33.91 |
| GSMUA_Achr2P13160_001 | Banana | plastid | 28.12 | 32.79 |
| GSMUA_Achr5P02100_001 | Banana | plastid | 26.39 | 31.15 |
| GSMUA_Achr4P32070_001 | Banana | nucleus | 30.21 | 30.42 |
| GSMUA_Achr4P28300_001 | Banana | nucleus | 24.65 | 29.46 |
| GSMUA_Achr2P12040_001 | Banana | plastid | 25.69 | 27.51 |
| GSMUA_Achr6P31690_001 | Banana | nucleus | 26.39 | 25.5 |
| GSMUA_Achr1P00560_001 | Banana | nucleus | 25.35 | 25.26 |
| GSMUA_Achr4P21690_001 | Banana | nucleus | 28.12 | 25.0 |
| GSMUA_Achr10P... | Banana | nucleus | 27.43 | 24.84 |
| GSMUA_Achr9P09830_001 | Banana | nucleus | 26.39 | 23.68 |
| GSMUA_Achr4P30100_001 | Banana | plastid | 24.65 | 23.28 |
| GSMUA_Achr6P10180_001 | Banana | plastid | 27.78 | 23.05 |
| GSMUA_Achr2P18250_001 | Banana | nucleus | 25.69 | 22.42 |
| GSMUA_Achr11P... | Banana | nucleus | 28.82 | 22.19 |
| GSMUA_Achr8P14860_001 | Banana | nucleus | 25.35 | 21.66 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P17270_001 | EnsemblPlants:GSMUA_Achr10T17270_001 | EnsemblPlantsGene:GSMUA_Achr10G17270_001 | Gene3D:3.30.40.10 | InterPro:E3ligase_BOI_like | InterPro:IPR001841 |
| InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR42647 | PANTHER:PTHR42647:SF2 |
| PFAM:PF13920 | PFscan:PS50089 | PIRSF:PIRSF036836 | SEG:seg | UniParc:UPI0002961289 | UniProt:M0RJ02 |
| MapMan:35.1 | : | : | : | : | : |
Description
Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G17270_001]
Coordinates
chr10:+:24571941..24573002
Molecular Weight (calculated)
31248.1 Da
IEP (calculated)
5.434
GRAVY (calculated)
-0.258
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSLIATVIV GDAGEQQHQI LNNAGVFSDR QSELTCNASG CRKRSREEAM TFSVGLPHSR SIESGATSTS GRHVSSSHAA PPPPCDLVSL LFQQNTEIDA
101: LVRLQNERLP TGLEEARKRH CRALLTVLEQ QVAKRLMEKE AELLMATRRN AELEEKVRQL SEEIQIWFAM AKNNETIVCN LRTNLEQVLL QGASGAAGRG
201: GYDDSEGGGF PADDAQSCCF EFDAAAAPAA DSEVATWRRA CKACGERDVS ILLLPCRHLC LCKDCEAKAD ACPVCGSAKN AYLQVFMC
101: LVRLQNERLP TGLEEARKRH CRALLTVLEQ QVAKRLMEKE AELLMATRRN AELEEKVRQL SEEIQIWFAM AKNNETIVCN LRTNLEQVLL QGASGAAGRG
201: GYDDSEGGGF PADDAQSCCF EFDAAAAPAA DSEVATWRRA CKACGERDVS ILLLPCRHLC LCKDCEAKAD ACPVCGSAKN AYLQVFMC
001: MLGGNNDNPV PQVLMNDSQF RYQSNTSLNQ LHLLGTMRAG CTIDPVNYFA NDNLAPMMRL NSTRGRETEN NNIMQRQQKL QISLNYNYNN NNTVVQDEVP
101: KQNLVSTGLR LSYDDDERNS SVTSANGSIT TPVYQSLGDN IRLDLNRQND ELDQFIKFRA DQMAKGVRDI KQRHVTSFVT ALEKDVSKKL QEKDHEIESM
201: NKKNRELVDK IKQVAVEAQN WHYKAKYNES VVNALKVNLQ QVMSHGNDNN AVGGGVADHH QMKEGFGDSE IDDEAASYNY LNIPGMPSTG MRCKLCNVKN
301: VSVLLVPCRH LSLCKDCDVF TGVCPVCQSL KTSSVQVFFF
101: KQNLVSTGLR LSYDDDERNS SVTSANGSIT TPVYQSLGDN IRLDLNRQND ELDQFIKFRA DQMAKGVRDI KQRHVTSFVT ALEKDVSKKL QEKDHEIESM
201: NKKNRELVDK IKQVAVEAQN WHYKAKYNES VVNALKVNLQ QVMSHGNDNN AVGGGVADHH QMKEGFGDSE IDDEAASYNY LNIPGMPSTG MRCKLCNVKN
301: VSVLLVPCRH LSLCKDCDVF TGVCPVCQSL KTSSVQVFFF
Arabidopsis Description
At1g60610 [Source:UniProtKB/TrEMBL;Acc:Q4TU35]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.