Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 60.96 | 71.7 |
| GSMUA_Achr6P10180_001 | Banana | plastid | 64.44 | 69.45 |
| Os03t0263800-01 | Rice | nucleus, plastid | 56.68 | 61.99 |
| EER95135 | Sorghum | plastid | 55.08 | 61.13 |
| TraesCS4D01G215600.1 | Wheat | plastid | 55.35 | 61.06 |
| TraesCS4B01G215100.1 | Wheat | plastid | 55.35 | 61.06 |
| TraesCS4A01G089200.1 | Wheat | plastid | 55.08 | 60.77 |
| Bra040255.1-P | Field mustard | nucleus | 37.17 | 60.7 |
| Zm00001d047856_P001 | Maize | nucleus, plastid | 53.21 | 60.49 |
| Zm00001d028532_P001 | Maize | nucleus, plastid | 54.28 | 60.24 |
| Solyc04g078760.2.1 | Tomato | nucleus | 49.47 | 54.73 |
| KRH05668 | Soybean | nucleus | 49.73 | 54.39 |
| HORVU4Hr1G061210.1 | Barley | cytosol | 59.63 | 54.0 |
| CDY17103 | Canola | cytosol | 42.51 | 53.72 |
| AT1G45976.1 | Thale cress | cytosol | 46.26 | 53.23 |
| CDY06767 | Canola | cytosol | 42.78 | 52.63 |
| CDY40841 | Canola | cytosol | 41.98 | 52.51 |
| KRH15376 | Soybean | nucleus, plastid | 48.93 | 52.14 |
| VIT_18s0001g10370.t01 | Wine grape | nucleus | 45.45 | 51.83 |
| CDY17048 | Canola | cytosol | 42.25 | 50.8 |
| Bra014051.1-P | Field mustard | nucleus | 41.98 | 50.48 |
| PGSC0003DMT400020551 | Potato | nucleus | 49.47 | 49.47 |
| GSMUA_Achr4P23050_001 | Banana | nucleus | 16.31 | 32.45 |
| GSMUA_Achr7P00850_001 | Banana | plastid | 18.98 | 30.87 |
| GSMUA_Achr10P... | Banana | cytosol, extracellular, nucleus, plastid | 22.19 | 28.82 |
| GSMUA_Achr2P13160_001 | Banana | plastid | 18.98 | 28.74 |
| GSMUA_Achr10P... | Banana | nucleus | 23.8 | 27.99 |
| GSMUA_Achr11P... | Banana | nucleus | 23.8 | 27.9 |
| GSMUA_Achr2P21330_001 | Banana | nucleus | 21.12 | 27.53 |
| GSMUA_Achr6P11810_001 | Banana | nucleus | 22.19 | 27.3 |
| GSMUA_Achr5P02100_001 | Banana | plastid | 17.38 | 26.64 |
| GSMUA_Achr4P32070_001 | Banana | nucleus | 18.98 | 24.83 |
| GSMUA_Achr6P16260_001 | Banana | nucleus | 21.66 | 24.04 |
| GSMUA_Achr2P12040_001 | Banana | plastid | 17.11 | 23.79 |
| GSMUA_Achr4P28300_001 | Banana | nucleus | 14.71 | 22.82 |
| GSMUA_Achr2P18250_001 | Banana | nucleus | 19.79 | 22.42 |
| GSMUA_Achr4P21690_001 | Banana | nucleus | 19.25 | 22.22 |
| GSMUA_Achr4P30100_001 | Banana | plastid | 17.91 | 21.97 |
| GSMUA_Achr1P00560_001 | Banana | nucleus | 16.58 | 21.45 |
| GSMUA_Achr6P08300_001 | Banana | plastid | 19.79 | 21.39 |
| GSMUA_Achr6P31690_001 | Banana | nucleus | 16.84 | 21.14 |
| GSMUA_Achr8P14860_001 | Banana | nucleus | 18.45 | 20.47 |
| GSMUA_Achr9P09830_001 | Banana | nucleus | 17.38 | 20.25 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr11P13510_001 | EnsemblPlants:GSMUA_Achr11T13510_001 | EnsemblPlantsGene:GSMUA_Achr11G13510_001 | Gene3D:3.30.40.10 | InterPro:E3ligase_BOI_like | InterPro:IPR001841 |
| InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR42647 | PANTHER:PTHR42647:SF10 |
| PFAM:PF13920 | PFscan:PS50089 | PIRSF:PIRSF036836 | SEG:seg | UniParc:UPI0002954ABB | UniProt:M0RRY1 |
| MapMan:35.1 | : | : | : | : | : |
Description
S-RNase-binding protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G13510_001]
Coordinates
chr11:+:14229905..14232659
Molecular Weight (calculated)
42108.5 Da
IEP (calculated)
5.452
GRAVY (calculated)
-0.295
Length
374 amino acids
Sequence
(BLAST)
(BLAST)
001: MANHVLDVTN DPIWGIKSRD PTSFSCALSL SLSLSLISHL CPFRSLAFLA MAFFPQQPNL HQPHHQQQQQ QSIPLRNFVP IDGHLSAPVS FFNAAGFPDP
101: SHLSLTNVTG VSPSAVLGAD GWEPRTKRVK EQDFLENSQI SSIDFLQTGT VSTGLGLSLD DRRVAASSGE SPLVLLPMVD ADIDRELQRM VTEMDSFIKI
201: EGERLRQSIL EKFQAKQFQT LAFVEEKILR KIREKDSEVE NINKKNMELE EQMKQLVMEV GAWQQRAKYN ENMVNSLKYN LEQLHAQNRD NREGCGDSEV
301: DDAASCCNGN FSLQLMLKEN KDSKEMACRV CGVNEVCMLL LPCRHLCLCK ECESKLSFCP LCQSSKFIGM EIYL
101: SHLSLTNVTG VSPSAVLGAD GWEPRTKRVK EQDFLENSQI SSIDFLQTGT VSTGLGLSLD DRRVAASSGE SPLVLLPMVD ADIDRELQRM VTEMDSFIKI
201: EGERLRQSIL EKFQAKQFQT LAFVEEKILR KIREKDSEVE NINKKNMELE EQMKQLVMEV GAWQQRAKYN ENMVNSLKYN LEQLHAQNRD NREGCGDSEV
301: DDAASCCNGN FSLQLMLKEN KDSKEMACRV CGVNEVCMLL LPCRHLCLCK ECESKLSFCP LCQSSKFIGM EIYL
001: MALHPHLQDS KNFRDFCGID GQISPELGFN RSENLHDQSQ HPPYIPPFHV AGFAPGPVVQ IDGSDGGNGA DFEWNYGLGL EPRRERIKEQ DFLENNSQIS
101: SIDFLQARSV STGLGLSLDN ARVASSDGSA LLSLVGDDID RELQRQDADI DRFLKIQGDQ LRHAILDKIK RGQQKTVSLM EEKVVQKLRE KDEELERINR
201: KNKELEVRME QLTMEAEAWQ QRAKYNENMI AALNYNLDRA QGRPRDSIEG CGDSEVDDTA SCFNGRDNSN NNTKTMMMCR FCGVREMCML LLPCNHMCLC
301: KECERKLSSC PLCQSSKFLG MEVYM
101: SIDFLQARSV STGLGLSLDN ARVASSDGSA LLSLVGDDID RELQRQDADI DRFLKIQGDQ LRHAILDKIK RGQQKTVSLM EEKVVQKLRE KDEELERINR
201: KNKELEVRME QLTMEAEAWQ QRAKYNENMI AALNYNLDRA QGRPRDSIEG CGDSEVDDTA SCFNGRDNSN NNTKTMMMCR FCGVREMCML LLPCNHMCLC
301: KECERKLSSC PLCQSSKFLG MEVYM
Arabidopsis Description
SBP1SBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178WK23]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.