Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06767 | Canola | cytosol | 93.58 | 91.12 |
| CDY40841 | Canola | cytosol | 78.72 | 77.93 |
| AT1G45976.1 | Thale cress | cytosol | 84.8 | 77.23 |
| CDY17048 | Canola | cytosol | 80.74 | 76.85 |
| KRH05668 | Soybean | nucleus | 63.85 | 55.26 |
| KRH15376 | Soybean | nucleus, plastid | 63.51 | 53.56 |
| Solyc04g078760.2.1 | Tomato | nucleus | 61.15 | 53.55 |
| VIT_18s0001g10370.t01 | Wine grape | nucleus | 57.77 | 52.13 |
| PGSC0003DMT400020551 | Potato | nucleus | 60.81 | 48.13 |
| GSMUA_Achr10P... | Banana | nucleus | 50.0 | 46.54 |
| GSMUA_Achr6P10180_001 | Banana | plastid | 50.68 | 43.23 |
| GSMUA_Achr11P... | Banana | nucleus | 53.72 | 42.51 |
| Os03t0263800-01 | Rice | nucleus, plastid | 48.99 | 42.4 |
| Zm00001d047856_P001 | Maize | nucleus, plastid | 46.62 | 41.95 |
| EER95135 | Sorghum | plastid | 47.64 | 41.84 |
| TraesCS4B01G215100.1 | Wheat | plastid | 47.64 | 41.59 |
| TraesCS4D01G215600.1 | Wheat | plastid | 47.64 | 41.59 |
| TraesCS4A01G089200.1 | Wheat | plastid | 47.3 | 41.3 |
| Zm00001d028532_P001 | Maize | nucleus, plastid | 46.62 | 40.95 |
| CDY34127 | Canola | extracellular | 7.43 | 36.67 |
| HORVU4Hr1G061210.1 | Barley | cytosol | 47.97 | 34.38 |
| CDX93396 | Canola | cytosol | 33.78 | 29.76 |
| CDY24542 | Canola | nucleus | 32.43 | 29.36 |
| CDY37958 | Canola | cytosol, plastid | 33.11 | 28.91 |
| CDY20963 | Canola | nucleus | 32.09 | 28.11 |
| CDY20611 | Canola | nucleus | 32.09 | 27.86 |
| CDY09609 | Canola | cytosol | 22.64 | 27.13 |
| CDY33511 | Canola | nucleus | 26.69 | 26.07 |
| CDX77733 | Canola | nucleus | 26.35 | 26.0 |
| CDX69109 | Canola | nucleus | 17.91 | 25.85 |
| CDY43447 | Canola | nucleus | 26.01 | 25.5 |
| CDY51856 | Canola | cytosol | 25.34 | 24.75 |
| CDX72513 | Canola | cytosol | 19.26 | 24.36 |
| CDY52651 | Canola | cytosol | 17.91 | 23.98 |
| CDY03162 | Canola | cytosol | 26.01 | 23.91 |
| CDY15019 | Canola | cytosol | 20.27 | 23.9 |
| CDX73168 | Canola | cytosol | 20.27 | 23.9 |
| CDY37172 | Canola | cytosol | 24.32 | 23.84 |
| CDY40647 | Canola | cytosol | 18.92 | 23.83 |
| CDX76311 | Canola | cytosol | 20.27 | 23.72 |
| CDY17506 | Canola | cytosol, nucleus, plastid | 19.93 | 23.32 |
| CDX90458 | Canola | cytosol | 23.65 | 23.03 |
| CDX94520 | Canola | cytosol | 17.57 | 22.22 |
| CDY09318 | Canola | cytosol | 17.57 | 22.22 |
| CDY07541 | Canola | cytosol | 17.57 | 22.22 |
| CDY21311 | Canola | cytosol | 17.57 | 22.22 |
| CDX88507 | Canola | nucleus | 22.3 | 22.15 |
| CDX87407 | Canola | nucleus | 22.97 | 21.52 |
| CDX79294 | Canola | nucleus | 21.96 | 21.38 |
| CDY51918 | Canola | cytosol | 19.93 | 20.56 |
| CDY24237 | Canola | nucleus | 22.3 | 20.37 |
| CDY64561 | Canola | nucleus | 23.31 | 20.29 |
| CDX82568 | Canola | nucleus | 23.31 | 20.29 |
| CDY43390 | Canola | cytosol | 21.96 | 20.0 |
| CDY26402 | Canola | cytosol | 19.93 | 19.93 |
| CDY13070 | Canola | cytosol | 18.24 | 19.35 |
| CDY01615 | Canola | cytosol | 19.93 | 19.34 |
| CDY71192 | Canola | cytosol | 18.24 | 19.29 |
| CDY71607 | Canola | cytosol | 19.93 | 19.28 |
| CDY46345 | Canola | cytosol | 18.24 | 19.15 |
| CDY18062 | Canola | cytosol | 18.24 | 19.15 |
| CDY23552 | Canola | cytosol | 10.14 | 13.82 |
Protein Annotations
| EnsemblPlants:CDY17103 | EnsemblPlantsGene:GSBRNA2T00095148001 | Gene3D:3.30.40.10 | GO:A0A078FXM5 | InterPro:E3ligase_BOI_like | InterPro:IPR001841 |
| InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR42647 | PANTHER:PTHR42647:SF10 |
| PFAM:PF13920 | PFscan:PS50089 | PIRSF:PIRSF036836 | ProteinID:CDY17103 | ProteinID:CDY17103.1 | UniParc:UPI0004EF3B94 |
| UniProt:A0A078FXM5 | MapMan:35.1 | : | : | : | : |
Description
BnaC06g00360DBnaC06g00360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FXM5]
Coordinates
chrLK032070:-:619700..621109
Molecular Weight (calculated)
33953.5 Da
IEP (calculated)
5.891
GRAVY (calculated)
-0.545
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MALPRHLDRH LQDSKNFRDF CGQISPELGF NSSTSLHDQS QHPPFHVAGF APVVQFDGVE WNSFGRKRVK EMDFLENNSQ ISSIDFWQGR SVSTGLGLSL
101: DSPPIGSALL PLVGDDVERE LQRQDAEIDR FLKIQGDQLR HAVLDKIQRS QYKTVALMEE RVVQKLREKD EELEMVNRTN KELEVRIEQL AMEAEAWQQR
201: AKYNENMVAA LNYNLERAHG RPRDSIEGCG DSEVDDTASC FNRRNGKMMC RFCGVREVCM LLLPCKHMCL CKECERNLSS CPLCQSSKFL GMEVYM
101: DSPPIGSALL PLVGDDVERE LQRQDAEIDR FLKIQGDQLR HAVLDKIQRS QYKTVALMEE RVVQKLREKD EELEMVNRTN KELEVRIEQL AMEAEAWQQR
201: AKYNENMVAA LNYNLERAHG RPRDSIEGCG DSEVDDTASC FNRRNGKMMC RFCGVREVCM LLLPCKHMCL CKECERNLSS CPLCQSSKFL GMEVYM
001: MALHPHLQDS KNFRDFCGID GQISPELGFN RSENLHDQSQ HPPYIPPFHV AGFAPGPVVQ IDGSDGGNGA DFEWNYGLGL EPRRERIKEQ DFLENNSQIS
101: SIDFLQARSV STGLGLSLDN ARVASSDGSA LLSLVGDDID RELQRQDADI DRFLKIQGDQ LRHAILDKIK RGQQKTVSLM EEKVVQKLRE KDEELERINR
201: KNKELEVRME QLTMEAEAWQ QRAKYNENMI AALNYNLDRA QGRPRDSIEG CGDSEVDDTA SCFNGRDNSN NNTKTMMMCR FCGVREMCML LLPCNHMCLC
301: KECERKLSSC PLCQSSKFLG MEVYM
101: SIDFLQARSV STGLGLSLDN ARVASSDGSA LLSLVGDDID RELQRQDADI DRFLKIQGDQ LRHAILDKIK RGQQKTVSLM EEKVVQKLRE KDEELERINR
201: KNKELEVRME QLTMEAEAWQ QRAKYNENMI AALNYNLDRA QGRPRDSIEG CGDSEVDDTA SCFNGRDNSN NNTKTMMMCR FCGVREMCML LLPCNHMCLC
301: KECERKLSSC PLCQSSKFLG MEVYM
Arabidopsis Description
SBP1SBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178WK23]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.