Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011582.1-P | Field mustard | cytosol, nucleus, plastid | 91.22 | 84.62 |
| CDY52651 | Canola | cytosol | 90.73 | 84.16 |
| CDY40647 | Canola | cytosol | 72.2 | 62.98 |
| CDX72513 | Canola | cytosol | 70.73 | 61.97 |
| CDX76311 | Canola | cytosol | 74.63 | 60.47 |
| CDX73168 | Canola | cytosol | 73.17 | 59.76 |
| CDY15019 | Canola | cytosol | 73.17 | 59.76 |
| CDY17506 | Canola | cytosol, nucleus, plastid | 73.17 | 59.29 |
| AT4G35070.1 | Thale cress | cytosol | 68.78 | 53.21 |
| VIT_03s0038g02450.t01 | Wine grape | nucleus | 42.93 | 40.74 |
| PGSC0003DMT400068728 | Potato | mitochondrion, nucleus | 41.95 | 32.58 |
| Solyc01g111610.2.1 | Tomato | cytosol | 38.54 | 32.51 |
| Solyc10g055560.1.1 | Tomato | nucleus | 41.95 | 31.85 |
| PGSC0003DMT400015829 | Potato | nucleus | 39.02 | 31.75 |
| KRG94235 | Soybean | cytosol | 33.66 | 27.82 |
| KRH51394 | Soybean | nucleus | 38.05 | 27.18 |
| KRH60696 | Soybean | nucleus, plastid | 38.05 | 26.71 |
| CDY34127 | Canola | extracellular | 7.8 | 26.67 |
| KRH24321 | Soybean | cytosol | 37.07 | 26.39 |
| KRH29000 | Soybean | cytosol | 36.1 | 25.78 |
| CDY09609 | Canola | cytosol | 25.85 | 21.46 |
| CDY09318 | Canola | cytosol | 22.93 | 20.09 |
| CDY07541 | Canola | cytosol | 22.93 | 20.09 |
| CDX94520 | Canola | cytosol | 22.93 | 20.09 |
| CDY21311 | Canola | cytosol | 22.93 | 20.09 |
| CDY40841 | Canola | cytosol | 27.8 | 19.06 |
| CDY18062 | Canola | cytosol | 25.85 | 18.79 |
| CDX88507 | Canola | nucleus | 27.32 | 18.79 |
| CDX79294 | Canola | nucleus | 27.8 | 18.75 |
| CDY13070 | Canola | cytosol | 25.37 | 18.64 |
| CDY26402 | Canola | cytosol | 26.83 | 18.58 |
| CDY71192 | Canola | cytosol | 25.37 | 18.57 |
| CDY46345 | Canola | cytosol | 25.37 | 18.44 |
| CDY17103 | Canola | cytosol | 25.85 | 17.91 |
| CDY24237 | Canola | nucleus | 28.29 | 17.9 |
| CDY43390 | Canola | cytosol | 28.29 | 17.85 |
| CDY51918 | Canola | cytosol | 24.88 | 17.77 |
| CDY17048 | Canola | cytosol | 26.83 | 17.68 |
| CDY06767 | Canola | cytosol | 25.85 | 17.43 |
| CDX87407 | Canola | nucleus | 26.83 | 17.41 |
| CDY01615 | Canola | cytosol | 25.85 | 17.38 |
| CDY43447 | Canola | nucleus | 25.37 | 17.22 |
| CDX90458 | Canola | cytosol | 25.37 | 17.11 |
| CDX77733 | Canola | nucleus | 24.88 | 17.0 |
| CDY71607 | Canola | cytosol | 25.37 | 16.99 |
| CDY33511 | Canola | nucleus | 24.88 | 16.83 |
| CDY37172 | Canola | cytosol | 24.39 | 16.56 |
| CDY51856 | Canola | cytosol | 24.39 | 16.5 |
| CDX82568 | Canola | nucleus | 27.32 | 16.47 |
| CDY64561 | Canola | nucleus | 26.34 | 15.88 |
| CDY03162 | Canola | cytosol | 24.88 | 15.84 |
| CDX93396 | Canola | cytosol | 22.93 | 13.99 |
| CDY37958 | Canola | cytosol, plastid | 22.44 | 13.57 |
| CDY20611 | Canola | nucleus | 22.44 | 13.49 |
| CDY20963 | Canola | nucleus | 21.46 | 13.02 |
| CDY24542 | Canola | nucleus | 20.49 | 12.84 |
| CDY23552 | Canola | cytosol | 8.29 | 7.83 |
Protein Annotations
| EnsemblPlants:CDX69109 | EnsemblPlantsGene:GSBRNA2T00130894001 | Gene3D:3.30.40.10 | GO:A0A078BYT7 | InterPro:E3ligase_BOI_like | InterPro:IPR013083 |
| InterPro:Znf_RING/FYVE/PHD | KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | ncoils:Coil | PANTHER:PTHR42647 |
| PANTHER:PTHR42647:SF6 | PFAM:PF13920 | PIRSF:PIRSF036836 | ProteinID:CDX69109 | ProteinID:CDX69109.1 | SEG:seg |
| UniParc:UPI0004EB6CB7 | UniPathway:UPA00144 | MapMan:35.1 | : | : | : |
Description
BnaC01g03440D
Coordinates
chrLK031789:+:2976292..2977115
Molecular Weight (calculated)
23641.3 Da
IEP (calculated)
5.062
GRAVY (calculated)
-0.655
Length
205 amino acids
Sequence
(BLAST)
(BLAST)
001: MEELYMNNNN LQTQKDFSHQ QSFLDALMEK ERQEIDQFIR TQSERLRYAL REQRRQETET LLRQMEAKAL VLMTRKEEEM SRALSKNVEL EDLLRRMEAE
101: NQTWQRMARE NEATVATLSS TLEQVKERAV TCHDDEGSCC GGDDSVPGKR MMSGSCLNCG SNGETRVLFL PCRHLCCCTE CEAGLVLCPI CSTPKKNRIE
201: AIITF
101: NQTWQRMARE NEATVATLSS TLEQVKERAV TCHDDEGSCC GGDDSVPGKR MMSGSCLNCG SNGETRVLFL PCRHLCCCTE CEAGLVLCPI CSTPKKNRIE
201: AIITF
001: MAIQAQLNYN APNANQIGFG GSEFSLINNN GVIGIGNDQS YLVNNLQLQK DFNQHALFHH QHHQQQQSPS QSFLAAQMEK QKQEIDQFIK IQNERLRYVL
101: QEQRKREMEM ILRKMESKAL LLMSQKEEEM SKALNKNMEL EDLLRKMEME NQTWQRMARE NEAIVQTLNT TLEQVRERAA TCYDAGEAEV EDEGSFCGGE
201: GDGNSLPAKK MKMSSCCCNC GSNGVTRVLF LPCRHLCCCM DCEEGLLLCP ICNTPKKSRI EALIF
101: QEQRKREMEM ILRKMESKAL LLMSQKEEEM SKALNKNMEL EDLLRKMEME NQTWQRMARE NEAIVQTLNT TLEQVRERAA TCYDAGEAEV EDEGSFCGGE
201: GDGNSLPAKK MKMSSCCCNC GSNGVTRVLF LPCRHLCCCM DCEEGLLLCP ICNTPKKSRI EALIF
Arabidopsis Description
At4g35070 [Source:UniProtKB/TrEMBL;Acc:Q66GR4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.