Factsheet for PGSC0003DMT400068728

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, mitochondrion

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g055560.1.1	Tomato	nucleus	91.29	89.26
PGSC0003DMT400015829	Potato	nucleus	61.74	64.68
VIT_03s0038g02450.t01	Wine grape	nucleus	41.67	50.93
CDY40647	Canola	cytosol	38.64	43.4
AT4G35070.1	Thale cress	cytosol	43.56	43.4
Bra017691.1-P	Field mustard	cytosol, extracellular, nucleus	38.26	42.98
CDX72513	Canola	cytosol	37.5	42.31
CDX69109	Canola	nucleus	32.58	41.95
Bra011582.1-P	Field mustard	cytosol, nucleus, plastid	34.85	41.63
CDY52651	Canola	cytosol	34.47	41.18
CDY15019	Canola	cytosol	39.02	41.04
Bra034672.1-P	Field mustard	cytosol	39.02	41.04
CDX73168	Canola	cytosol	39.02	41.04
CDX76311	Canola	cytosol	38.64	40.32
CDY17506	Canola	cytosol, nucleus, plastid	38.64	40.32
KRH51394	Soybean	nucleus	41.29	37.98
KRH60696	Soybean	nucleus, plastid	41.67	37.67
KRH24321	Soybean	cytosol	38.64	35.42
KRH29000	Soybean	cytosol	36.74	33.8
KRG94235	Soybean	cytosol	28.41	30.24
PGSC0003DMT400026783	Potato	cytosol, mitochondrion, nucleus, plastid, vacuole	26.14	21.36
PGSC0003DMT400062617	Potato	nucleus	23.86	21.0
PGSC0003DMT400052841	Potato	nucleus	26.89	20.34
PGSC0003DMT400004642	Potato	nucleus	26.14	19.94
PGSC0003DMT400068387	Potato	nucleus	24.24	18.71
PGSC0003DMT400035059	Potato	nucleus	21.59	17.17
PGSC0003DMT400046745	Potato	nucleus	19.32	15.36
PGSC0003DMT400020551	Potato	nucleus	20.83	14.71

Protein Annotations

EntrezGene:102592635	Gene3D:3.30.40.10	MapMan:35.1	ncoils:Coil	InterPro:E3ligase_BOI_like	InterPro:IPR001841
InterPro:IPR013083	UniProt:M1CJE8	EnsemblPlantsGene:PGSC0003DMG400026724	PGSC:PGSC0003DMG400026724	EnsemblPlants:PGSC0003DMT400068728	PIRSF:PIRSF036836
PFscan:PS50089	PANTHER:PTHR42647	PANTHER:PTHR42647:SF6	UniParc:UPI0002962F77	RefSeq:XP_006360904.2	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

ATP binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400026724]

Coordinates

chr10:+:47247629..47248829

Molecular Weight (calculated)

30560.6 Da

IEP (calculated)

6.343

GRAVY (calculated)

-0.537

Length

264 amino acids

Sequence
(BLAST)

001: MAIQAHLYSE NLGFSLGSLQ DLMDDNVCGF NQFCFNPQPE QQQQQQPYLL QIQQQQFQIL NQKNNIQNLM NSSNSTMFPH NLASQFEKQR VEIDQFISLQ
101: NERLRLALQE QRKQQVALIL RNYESKTHLL LKQKDEEIAK AANRSKELED FLKRIEMENQ TWKRIANENE AIVVSLNNTI EQLRENVCFQ SSNVGDAESC
201: CDVQPIEDKV QSSIRMMCKR CNSSKSCMVF LPCRHLSSCK DCETCLHSCP LCNMVKKATI EALI

Best Arabidopsis Sequence Match ( AT4G35070.1 )
(BLAST)

001: MAIQAQLNYN APNANQIGFG GSEFSLINNN GVIGIGNDQS YLVNNLQLQK DFNQHALFHH QHHQQQQSPS QSFLAAQMEK QKQEIDQFIK IQNERLRYVL
101: QEQRKREMEM ILRKMESKAL LLMSQKEEEM SKALNKNMEL EDLLRKMEME NQTWQRMARE NEAIVQTLNT TLEQVRERAA TCYDAGEAEV EDEGSFCGGE
201: GDGNSLPAKK MKMSSCCCNC GSNGVTRVLF LPCRHLCCCM DCEEGLLLCP ICNTPKKSRI EALIF

Arabidopsis Description

At4g35070 [Source:UniProtKB/TrEMBL;Acc:Q66GR4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.