Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g031710.2.1 | Tomato | nucleus | 90.67 | 87.74 |
| PGSC0003DMT400026783 | Potato | cytosol, mitochondrion, nucleus, plastid, vacuole | 71.67 | 66.56 |
| VIT_10s0042g01070.t01 | Wine grape | nucleus | 52.0 | 51.49 |
| KRH36722 | Soybean | nucleus | 51.0 | 49.35 |
| KRH11729 | Soybean | nucleus | 50.33 | 48.24 |
| CDX94520 | Canola | cytosol | 36.0 | 46.15 |
| CDY07541 | Canola | cytosol | 36.0 | 46.15 |
| CDY09318 | Canola | cytosol | 36.0 | 46.15 |
| CDY21311 | Canola | cytosol | 36.0 | 46.15 |
| KRH50476 | Soybean | cytosol, nucleus, plastid | 47.67 | 44.69 |
| KRG89416 | Soybean | nucleus | 46.67 | 44.59 |
| AT5G45100.1 | Thale cress | cytosol | 43.67 | 44.56 |
| GSMUA_Achr2P13160_001 | Banana | plastid | 36.33 | 44.13 |
| Bra039533.1-P | Field mustard | cytosol, nucleus, plastid | 42.33 | 42.91 |
| CDY26402 | Canola | cytosol | 42.0 | 42.57 |
| GSMUA_Achr7P00850_001 | Banana | plastid | 32.0 | 41.74 |
| Bra013423.1-P | Field mustard | nucleus | 40.67 | 41.22 |
| AT4G19700.1 | Thale cress | cytosol | 41.67 | 41.12 |
| CDY71192 | Canola | cytosol | 38.33 | 41.07 |
| GSMUA_Achr4P23050_001 | Banana | nucleus | 25.67 | 40.96 |
| GSMUA_Achr4P32070_001 | Banana | nucleus | 39.0 | 40.91 |
| CDY51918 | Canola | cytosol | 38.67 | 40.42 |
| GSMUA_Achr5P02100_001 | Banana | plastid | 32.67 | 40.16 |
| CDY13070 | Canola | cytosol | 37.33 | 40.14 |
| CDY18062 | Canola | cytosol | 37.67 | 40.07 |
| Bra028364.1-P | Field mustard | cytosol, nucleus, plastid | 37.67 | 40.07 |
| Bra027588.1-P | Field mustard | cytosol, nucleus, plastid | 37.0 | 39.78 |
| Bra012532.1-P | Field mustard | nucleus | 40.33 | 39.54 |
| CDY71607 | Canola | cytosol | 40.33 | 39.54 |
| CDY46345 | Canola | cytosol | 37.0 | 39.36 |
| CDY01615 | Canola | cytosol | 40.0 | 39.34 |
| GSMUA_Achr4P28300_001 | Banana | nucleus | 31.33 | 39.0 |
| GSMUA_Achr6P31690_001 | Banana | nucleus | 38.67 | 38.93 |
| GSMUA_Achr9P09830_001 | Banana | nucleus | 37.33 | 34.89 |
| TraesCS7A01G442300.1 | Wheat | mitochondrion | 34.0 | 32.18 |
| TraesCS3B01G484600.1 | Wheat | cytosol | 29.33 | 32.0 |
| TraesCS7D01G431300.1 | Wheat | mitochondrion | 33.33 | 31.95 |
| TraesCS3A01G448500.1 | Wheat | mitochondrion | 31.0 | 31.74 |
| TraesCS7B01G340700.1 | Wheat | mitochondrion | 33.0 | 31.73 |
| TraesCS3D01G441300.1 | Wheat | mitochondrion | 30.67 | 31.72 |
| TraesCS6A01G079900.1 | Wheat | cytosol, mitochondrion, plastid | 25.0 | 31.38 |
| TraesCS3D01G441000.1 | Wheat | mitochondrion | 30.33 | 31.38 |
| TraesCS7B01G340500.1 | Wheat | mitochondrion | 32.67 | 31.11 |
| HORVU7Hr1G100540.2 | Barley | mitochondrion | 31.33 | 30.92 |
| TraesCS7B01G340600.1 | Wheat | mitochondrion | 32.0 | 30.77 |
| TraesCS4D01G018100.1 | Wheat | mitochondrion, nucleus | 31.0 | 30.69 |
| HORVU4Hr1G003180.3 | Barley | mitochondrion | 31.33 | 30.62 |
| HORVU7Hr1G100520.1 | Barley | cytosol, mitochondrion | 31.33 | 30.62 |
| TraesCS7A01G442100.1 | Wheat | mitochondrion | 32.0 | 30.57 |
| TraesCS4B01G019600.1 | Wheat | mitochondrion | 31.33 | 30.32 |
| TraesCS7A01G441900.1 | Wheat | mitochondrion | 31.67 | 30.06 |
| TraesCS7D01G431200.1 | Wheat | mitochondrion | 30.33 | 29.55 |
| TraesCS4A01G293700.1 | Wheat | mitochondrion | 30.0 | 29.22 |
| TraesCS6D01G073600.1 | Wheat | cytosol, nucleus, plastid | 26.0 | 28.78 |
| EER91098 | Sorghum | nucleus | 34.0 | 28.73 |
| TraesCS7D01G431100.1 | Wheat | mitochondrion, nucleus | 30.0 | 28.66 |
| Zm00001d013571_P001 | Maize | cytosol, nucleus, plastid | 30.67 | 27.88 |
| TraesCS6D01G110700.1 | Wheat | nucleus | 23.67 | 27.0 |
| HORVU6Hr1G021880.1 | Barley | plastid | 23.33 | 26.82 |
| HORVU6Hr1G021960.1 | Barley | plastid | 23.33 | 26.82 |
| TraesCS6A01G120700.1 | Wheat | nucleus | 22.67 | 25.86 |
| TraesCS6B01G149100.1 | Wheat | nucleus | 22.67 | 25.86 |
| Zm00001d033419_P001 | Maize | plastid | 24.0 | 25.71 |
| PGSC0003DMT400015829 | Potato | nucleus | 20.33 | 24.21 |
| PGSC0003DMT400068728 | Potato | mitochondrion, nucleus | 21.0 | 23.86 |
| PGSC0003DMT400046745 | Potato | nucleus | 23.0 | 20.78 |
| PGSC0003DMT400035059 | Potato | nucleus | 22.0 | 19.88 |
| PGSC0003DMT400068387 | Potato | nucleus | 22.0 | 19.3 |
| PGSC0003DMT400020551 | Potato | nucleus | 24.0 | 19.25 |
| PGSC0003DMT400004642 | Potato | nucleus | 21.67 | 18.79 |
| PGSC0003DMT400052841 | Potato | nucleus | 21.0 | 18.05 |
Protein Annotations
| EntrezGene:102579240 | Gene3D:3.30.40.10 | MapMan:35.1 | ncoils:Coil | InterPro:E3ligase_BOI_like | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR001841 | InterPro:IPR013083 | UniProt:M1C9B3 | PFAM:PF13920 |
| EnsemblPlantsGene:PGSC0003DMG400024368 | PGSC:PGSC0003DMG400024368 | EnsemblPlants:PGSC0003DMT400062617 | PIRSF:PIRSF036836 | PFscan:PS50089 | PANTHER:PTHR42647 |
| PANTHER:PTHR42647:SF12 | UniParc:UPI000294AA89 | RefSeq:XP_006356895.1 | RefSeq:XP_015168660.1 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400024368]
Coordinates
chr2:-:14970045..14971395
Molecular Weight (calculated)
33916.4 Da
IEP (calculated)
6.251
GRAVY (calculated)
-0.564
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MASVEARHLN LLNQQRNLIN SNGFVYNTQM SSGLLPMPEN YLPIQIQPKT SVNTESGLTF NLPTNDVVAP RKRSRDSFTP SFSTPQKPCN GLSQIPSFVG
101: DDVLPLVQQY QLDINSIISH HTKKIRLELE EQQKYQSRML VSAISERVMK KMKEKDEQIQ RIGKINLVLQ ERVKTLYMEN QLWRDLAQAN EATANSLRSN
201: LEQVLAHVTE ERLSAEEDAE SCCGSNNEED DKEEEVRTLA GDAQDKRNRM CRRCGERESC VLLLPCRHLC LCTVCGSSLQ DACPVCNSNM NATVHVNMSS
101: DDVLPLVQQY QLDINSIISH HTKKIRLELE EQQKYQSRML VSAISERVMK KMKEKDEQIQ RIGKINLVLQ ERVKTLYMEN QLWRDLAQAN EATANSLRSN
201: LEQVLAHVTE ERLSAEEDAE SCCGSNNEED DKEEEVRTLA GDAQDKRNRM CRRCGERESC VLLLPCRHLC LCTVCGSSLQ DACPVCNSNM NATVHVNMSS
001: MAVEAHHLNP LFSSNREMIH PVEASGVVYN TQMRYGTVPT FNPTVECQTS LFNPIYNISP VDRLVHQSMK PTIQSVDSSL TFNSDNNVDF LRPVSSRKRS
101: REESVVLNPS AYMQIQKNPT DPLMFLGQDL SSNVQQHHFD IDRLISNHVE RMRMEIEEKR KTQGRRIVEA VEQGLMKTLR AKDDEINHIG KLNLFLEEKV
201: KSLCVENQIW RDVAQSNEAT VNALRSNLQQ VLAAVERNRW EEPPTVADDA QSCCGSNDEG DSEEERWKLA GEAQDTKKMC RVGMSMCRSC GKGEASVLLL
301: PCRHMCLCSV CGSSLNTCPI CKSPKTASLH VNLSS
101: REESVVLNPS AYMQIQKNPT DPLMFLGQDL SSNVQQHHFD IDRLISNHVE RMRMEIEEKR KTQGRRIVEA VEQGLMKTLR AKDDEINHIG KLNLFLEEKV
201: KSLCVENQIW RDVAQSNEAT VNALRSNLQQ VLAAVERNRW EEPPTVADDA QSCCGSNDEG DSEEERWKLA GEAQDTKKMC RVGMSMCRSC GKGEASVLLL
301: PCRHMCLCSV CGSSLNTCPI CKSPKTASLH VNLSS
Arabidopsis Description
BRG3Probable BOI-related E3 ubiquitin-protein ligase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDD1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.