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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • mitochondrion 4
  • cytosol 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, nucleus
iPSORT:mitochondrion
MultiLoc:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
 plastid: 23198870
msms PMID: 23198870 doi
M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d002405_P001
Zm00001d004086_P001
Zm00001d013039_P001
Zm00001d013692_P001
Zm00001d014090_P002
Zm00001d016457_P001
Zm00001d018530_P001
Zm00001d021137_P002
Zm00001d024376_P001
Zm00001d026252_P001
Zm00001d031081_P001
Zm00001d032789_P001
Zm00001d033223_P003
Zm00001d034543_P001
Zm00001d038652_P003
Zm00001d038857_P001
Zm00001d050195_P001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G19700.1 Zm00001d038652_P003 AT1G45145.1 21798944
AT4G19700.1 Zm00001d002405_P001 AT2G24570.1 21798944
AT4G19700.1 Zm00001d004086_P001 AT2G24570.1 21798944
AT4G19700.1 Zm00001d016457_P001 AT2G24570.1 21798944
AT4G19700.1 Zm00001d024376_P001 AT2G24570.1 21798944
AT4G19700.1 Zm00001d026252_P001 AT2G24570.1 21798944
AT4G19700.1 Zm00001d050195_P001 AT2G24570.1 21798944
AT4G19700.1 Zm00001d014090_P002 AT2G33210.1 21798944
AT4G19700.1 Zm00001d032789_P001 AT2G33210.1 21798944
AT4G19700.1 Zm00001d021137_P002 AT2G43370.1 21798944
AT4G19700.1 Zm00001d038857_P001 AT3G13860.1 21798944
AT4G19700.1 Zm00001d013039_P001 AT4G02770.1 21798944
AT4G19700.1 Zm00001d034543_P001 AT4G02770.1 21798944
AT4G19700.1 Zm00001d002405_P001 AT4G31550.1 21798944
AT4G19700.1 Zm00001d004086_P001 AT4G31550.1 21798944
AT4G19700.1 Zm00001d016457_P001 AT4G31550.1 21798944
AT4G19700.1 Zm00001d024376_P001 AT4G31550.1 21798944
AT4G19700.1 Zm00001d026252_P001 AT4G31550.1 21798944
AT4G19700.1 Zm00001d050195_P001 AT4G31550.1 21798944
AT4G19700.1 Zm00001d018530_P001 AT5G08330.1 21798944
AT4G19700.1 Zm00001d013692_P001 AT5G38640.1 21798944
AT4G19700.1 Zm00001d031081_P001 AT5G38640.1 21798944
AT4G19700.1 Zm00001d033223_P003 AT5G38640.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d013571_P001 Maize cytosol, nucleus, plastid 56.79 48.18
EER91098 Sorghum nucleus 57.14 45.07
Zm00001d010503_P001 Maize cytosol, mitochondrion 17.86 38.76
Zm00001d004743_P001 Maize plastid 20.71 35.15
TraesCS3D01G441300.1 Wheat mitochondrion 35.0 33.79
TraesCS3A01G448500.1 Wheat mitochondrion 35.36 33.79
HORVU7Hr1G100520.1 Barley cytosol, mitochondrion 36.07 32.9
TraesCS3B01G484600.1 Wheat cytosol 31.79 32.36
GSMUA_Achr7P00850_001 Banana plastid 26.43 32.17
TraesCS4A01G293700.1 Wheat mitochondrion 35.36 32.14
TraesCS3D01G441000.1 Wheat mitochondrion 32.86 31.72
TraesCS7D01G431300.1 Wheat mitochondrion 35.36 31.63
HORVU4Hr1G003180.3 Barley mitochondrion 34.29 31.27
TraesCS4D01G018100.1 Wheat mitochondrion, nucleus 33.57 31.02
HORVU7Hr1G100540.2 Barley mitochondrion 33.57 30.92
TraesCS7B01G340700.1 Wheat mitochondrion 34.29 30.77
TraesCS4B01G019600.1 Wheat mitochondrion 33.93 30.65
TraesCS7D01G431100.1 Wheat mitochondrion, nucleus 34.29 30.57
TraesCS7A01G442300.1 Wheat mitochondrion 33.93 29.97
TraesCS7D01G431200.1 Wheat mitochondrion 32.86 29.87
TraesCS7B01G340600.1 Wheat mitochondrion 33.21 29.81
TraesCS7A01G441900.1 Wheat mitochondrion 33.57 29.75
TraesCS7B01G340500.1 Wheat mitochondrion 33.21 29.52
GSMUA_Achr4P28300_001 Banana nucleus 25.36 29.46
TraesCS7A01G442100.1 Wheat mitochondrion 32.86 29.3
GSMUA_Achr2P13160_001 Banana plastid 25.36 28.74
GSMUA_Achr4P23050_001 Banana nucleus 19.29 28.72
Zm00001d026161_P001 Maize cytosol 13.93 27.66
HORVU6Hr1G021960.1 Barley plastid 25.71 27.59
HORVU6Hr1G021880.1 Barley plastid 25.71 27.59
GSMUA_Achr4P32070_001 Banana nucleus 27.86 27.27
GSMUA_Achr5P02100_001 Banana plastid 23.57 27.05
GSMUA_Achr6P31690_001 Banana nucleus 27.86 26.17
TraesCS6A01G079900.1 Wheat cytosol, mitochondrion, plastid 21.79 25.52
TraesCS6B01G149100.1 Wheat nucleus 23.93 25.48
TraesCS6D01G073600.1 Wheat cytosol, nucleus, plastid 24.64 25.46
GSMUA_Achr9P09830_001 Banana nucleus 28.93 25.23
TraesCS6A01G120700.1 Wheat nucleus 23.57 25.1
Solyc02g069180.2.1 Tomato plastid 25.36 25.09
Bra035092.1-P Field mustard nucleus 27.5 24.37
CDX87407 Canola nucleus 27.5 24.37
CDY07541 Canola cytosol 20.36 24.36
CDY09318 Canola cytosol 20.36 24.36
CDX94520 Canola cytosol 20.36 24.36
CDY21311 Canola cytosol 20.36 24.36
TraesCS6D01G110700.1 Wheat nucleus 22.86 24.33
Zm00001d025319_P001 Maize cytosol 26.79 24.27
PGSC0003DMT400062617 Potato nucleus 25.71 24.0
PGSC0003DMT400026783 Potato cytosol, mitochondrion, nucleus, plastid, vacuole 27.5 23.84
AT5G45100.1 Thale cress cytosol 25.0 23.81
CDY26402 Canola cytosol 25.0 23.65
Bra039533.1-P Field mustard cytosol, nucleus, plastid 25.0 23.65
CDX88507 Canola nucleus 25.0 23.49
KRH43767 Soybean nucleus 21.07 23.32
Zm00001d003850_P001 Maize extracellular 27.5 23.05
KRH11729 Soybean nucleus 25.71 23.0
VIT_10s0042g01070.t01 Wine grape nucleus 24.64 22.77
VIT_19s0027g00740.t01 Wine grape nucleus 25.0 22.65
KRH36722 Soybean nucleus 25.0 22.58
KRH50476 Soybean cytosol, nucleus, plastid 25.71 22.5
Bra039354.1-P Field mustard cytosol 26.07 22.46
CDY43390 Canola cytosol 26.07 22.46
Bra034718.1-P Field mustard nucleus 26.43 21.96
Solyc02g031710.2.1 Tomato nucleus 24.29 21.94
Bra001477.1-P Field mustard nucleus 26.43 21.76
CDY24237 Canola nucleus 25.0 21.6
AT3G12920.1 Thale cress nucleus 25.71 21.49
CDX82568 Canola nucleus 26.07 21.47
CDY64561 Canola nucleus 26.07 21.47
KRG89416 Soybean nucleus 23.93 21.34
AT4G19700.1 Thale cress cytosol 22.86 21.05
CDY01615 Canola cytosol 22.86 20.98
KRH13682 Soybean nucleus 25.0 20.77
CDY23552 Canola cytosol 16.07 20.74
CDX79294 Canola nucleus 22.5 20.72
CDY71607 Canola cytosol 22.5 20.59
Bra012532.1-P Field mustard nucleus 22.5 20.59
Zm00001d025310_P001 Maize cytosol 23.57 20.56
CDY71192 Canola cytosol 20.36 20.36
Zm00001d003852_P001 Maize cytosol, nucleus, plastid 23.93 20.3
CDY18062 Canola cytosol 20.36 20.21
Bra028364.1-P Field mustard cytosol, nucleus, plastid 20.36 20.21
CDY46345 Canola cytosol 20.36 20.21
Zm00001d047069_P001 Maize cytosol 23.93 20.18
AT1G79110.1 Thale cress nucleus 25.71 20.11
CDY13070 Canola cytosol 20.0 20.07
Bra027588.1-P Field mustard cytosol, nucleus, plastid 20.0 20.07
Bra013423.1-P Field mustard nucleus 20.71 19.59
Zm00001d029988_P001 Maize cytosol, mitochondrion, nucleus 23.21 19.35
CDY51918 Canola cytosol 19.29 18.82
Zm00001d052640_P001 Maize cytosol, extracellular, nucleus 19.29 18.24
Zm00001d016648_P001 Maize cytosol 20.0 18.06
Zm00001d052639_P001 Maize extracellular 21.43 17.75
Zm00001d051484_P001 Maize nucleus, plastid 21.43 17.0
Zm00001d017649_P001 Maize plastid 18.93 16.01
Zm00001d047856_P001 Maize nucleus, plastid 15.71 13.37
Zm00001d003613_P002 Maize nucleus 20.71 13.36
Zm00001d028532_P001 Maize nucleus, plastid 15.71 13.06
Zm00001d015130_P001 Maize cytosol, nucleus, plastid 13.93 10.96
Protein Annotations
EnsemblPlants:Zm00001d033419_P001EnsemblPlants:Zm00001d033419_T001EnsemblPlantsGene:Zm00001d033419GO:GO:0003674GO:GO:0003824GO:GO:0016874
ncoils:CoilPANTHER:PTHR42647PANTHER:PTHR42647:SF12ProteinID:ONM07575.1SEG:segUniParc:UPI0008449630
UniProt:A0A1D6KYW5MapMan:35.2::::
Description
Probable BOI-related E3 ubiquitin-protein ligase 2
Coordinates
chr1:+:262565235..262566607
Molecular Weight (calculated)
30537.8 Da
IEP (calculated)
9.672
GRAVY (calculated)
-0.620
Length
280 amino acids
Sequence
(BLAST)
001: MAVEAHRLLL AGGHRQQQQQ QQLASAGWPW AGADEDRCAT TARPSQHHHH QQQQPQQELR LHNASCVGVL APRVSTIAAG GQMFLGDAAE SDVTFGGGGA
101: AARQEVTAVA PAPKRRKRAE QQQTPPVFQV CAADDVAAQF QQHIVDVNRL VFQQTANMWA ALTELRRRQA RQVVAAVEAA AATRLRAREE EVQRTARING
201: TLEERARSLY VEAQLWRDLA RANEATANEL RAELQQALDD QRTRGAPGAG ADADDAGSCC RGGRTAGRVR RWRGRARCAA
Best Arabidopsis Sequence Match ( AT3G12920.1 )
(BLAST)
001: MAVEAHHLNP LFSSNREMIH PVEASGVVYN TQMRYGTVPT FNPTVECQTS LFNPIYNISP VDRLVHQSMK PTIQSVDSSL TFNSDNNVDF LRPVSSRKRS
101: REESVVLNPS AYMQIQKNPT DPLMFLGQDL SSNVQQHHFD IDRLISNHVE RMRMEIEEKR KTQGRRIVEA VEQGLMKTLR AKDDEINHIG KLNLFLEEKV
201: KSLCVENQIW RDVAQSNEAT VNALRSNLQQ VLAAVERNRW EEPPTVADDA QSCCGSNDEG DSEEERWKLA GEAQDTKKMC RVGMSMCRSC GKGEASVLLL
301: PCRHMCLCSV CGSSLNTCPI CKSPKTASLH VNLSS
Arabidopsis Description
BRG3Probable BOI-related E3 ubiquitin-protein ligase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDD1]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.