Factsheet for Zm00001d003613_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010503_P001	Maize	cytosol, mitochondrion	28.11	94.57
Zm00001d004743_P001	Maize	plastid	33.41	87.88
Zm00001d026161_P001	Maize	cytosol	25.81	79.43
Zm00001d025319_P001	Maize	cytosol	32.49	45.63
Zm00001d003850_P001	Maize	extracellular	28.57	37.13
Os04t0403200-01	Rice	nucleus	26.04	32.56
Zm00001d016648_P001	Maize	cytosol	21.43	30.0
Zm00001d003852_P001	Maize	cytosol, nucleus, plastid	22.12	29.09
Zm00001d025310_P001	Maize	cytosol	21.43	28.97
Zm00001d052640_P001	Maize	cytosol, extracellular, nucleus	17.05	25.0
Zm00001d052639_P001	Maize	extracellular	17.51	22.49
GSMUA_Achr10P...	Banana	nucleus	15.67	21.38
GSMUA_Achr6P16260_001	Banana	nucleus	16.13	20.77
Zm00001d033419_P001	Maize	plastid	13.36	20.71
Zm00001d013571_P001	Maize	cytosol, nucleus, plastid	14.98	19.7
GSMUA_Achr6P08300_001	Banana	plastid	14.75	18.5
Zm00001d029988_P001	Maize	cytosol, mitochondrion, nucleus	14.06	18.15
Zm00001d047069_P001	Maize	cytosol	13.36	17.47
Zm00001d051484_P001	Maize	nucleus, plastid	13.59	16.71
Zm00001d017649_P001	Maize	plastid	12.44	16.31
Zm00001d015130_P001	Maize	cytosol, nucleus, plastid	11.29	13.76
Zm00001d028532_P001	Maize	nucleus, plastid	8.99	11.57
Zm00001d047856_P001	Maize	nucleus, plastid	8.76	11.55
Os11t0543100-01	Rice	cytosol	3.69	8.04

Protein Annotations

EnsemblPlants:Zm00001d003613_P002	EnsemblPlants:Zm00001d003613_T002	EnsemblPlantsGene:Zm00001d003613	Gene3D:1.10.260.100	InterPro:STI1_HS-bd	ncoils:Coil
PANTHER:PTHR42647	PANTHER:PTHR42647:SF2	ProteinID:ONM17253.1	SEG:seg	SMART:SM00727	UniParc:UPI000842BD7A
UniProt:A0A1D6EA40	MapMan:23.1.3.3	:	:	:	:

Description

Protein TIC 40 chloroplastic

Coordinates

chr2:+:50128295..50141133

Molecular Weight (calculated)

47186.3 Da

IEP (calculated)

8.270

GRAVY (calculated)

-0.416

Length

434 amino acids

Sequence
(BLAST)

001: MASGVLSQLY HQGVEVDALV RVETDRMRAA LQEARRRHAR GVVAAVGRAA EARLRAAEAE LERACRRGAD LEERLRQLAG EGQAWLGVAR SHEVVAAGLR
101: ATLDKVLQQP AVAAAGGGEC GVAEDAQSCC FVASPSGLVA GDAVSTGHNS QGKKEQEQAA NPMPTRSSQV QPTPPHPPRR RRRRVANGNF SKRRRGSTAR
201: NFNRPHRRGL LLTDPEGRLD SRPSPATPGM PSSRLVHLIL LATLSLLLAQ TLASSAPVPA AGSASAESGD PCATTVADGE ADVPLCPVWC FRPDPVCGAD
301: GVTYCYLPEE MRNPDSFKWM LQNPMYRQQL QDMLKNMGGS PDQWDNRMLD HLKNFDLSSP EVRQQFAQVG MTPEEVVSKI MANPDVAVAF QNPKIQTAIM
401: DCSQNPLNIV KYQNDKEVMD VFMKISQIFP QING

Best Arabidopsis Sequence Match ( AT5G16620.1 )
(BLAST)

001: MENLTLVSCS ASSPKLLIGC NFTSSLKNPT GFSRRTPNIV LRCSKISASA QSQSPSSRPE NTGEIVVVKQ RSKAFASIFS SSRDQQTTSV ASPSVPVPPP
101: SSSTIGSPLF WIGVGVGLSA LFSYVTSNLK KYAMQTAMKT MMNQMNTQNS QFNNSGFPSG SPFPFPFPPQ TSPASSPFQS QSQSSGATVD VTATKVETPP
201: STKPKPTPAK DIEVDKPSVV LEASKEKKEE KNYAFEDISP EETTKESPFS NYAEVSETNS PKETRLFEDV LQNGAGPANG ATASEVFQSL GGGKGGPGLS
301: VEALEKMMED PTVQKMVYPY LPEEMRNPET FKWMLKNPQY RQQLQDMLNN MSGSGEWDKR MTDTLKNFDL NSPEVKQQFN QIGLTPEEVI SKIMENPDVA
401: MAFQNPRVQA ALMECSENPM NIMKYQNDKE VMDVFNKISQ LFPGMTG

Arabidopsis Description

TIC40TIC40 [Source:UniProtKB/TrEMBL;Acc:A0A178UEV6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.