Factsheet for Zm00001d052639_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
extracellular 4
mitochondrion 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, plastid, secretory
iPSORT:	plastid
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU83597	Sorghum	cytosol	75.15	74.93
Zm00001d052640_P001	Maize	cytosol, extracellular, nucleus	51.18	58.45
Os11t0542100-01	Rice	cytosol	48.22	49.85
Zm00001d010503_P001	Maize	cytosol, mitochondrion	16.86	44.19
Zm00001d004743_P001	Maize	plastid	20.41	41.82
Zm00001d026161_P001	Maize	cytosol	17.16	41.13
Zm00001d003850_P001	Maize	extracellular	40.24	40.72
Zm00001d025319_P001	Maize	cytosol	36.98	40.45
Zm00001d003852_P001	Maize	cytosol, nucleus, plastid	37.28	38.18
Zm00001d016648_P001	Maize	cytosol	32.84	35.81
Zm00001d025310_P001	Maize	cytosol	33.73	35.51
GSMUA_Achr10P...	Banana	nucleus	31.36	33.33
GSMUA_Achr6P16260_001	Banana	nucleus	31.36	31.45
GSMUA_Achr6P08300_001	Banana	plastid	29.59	28.9
Zm00001d047069_P001	Maize	cytosol	24.56	25.0
Zm00001d013571_P001	Maize	cytosol, nucleus, plastid	23.96	24.55
Zm00001d029988_P001	Maize	cytosol, mitochondrion, nucleus	24.26	24.4
Zm00001d051484_P001	Maize	nucleus, plastid	24.26	23.23
Zm00001d017649_P001	Maize	plastid	22.49	22.96
Zm00001d033419_P001	Maize	plastid	17.75	21.43
Os02t0246101-00	Rice	cytosol	10.95	21.39
Zm00001d047856_P001	Maize	nucleus, plastid	20.12	20.67
Zm00001d028532_P001	Maize	nucleus, plastid	19.82	19.88
Zm00001d003613_P002	Maize	nucleus	22.49	17.51
Zm00001d015130_P001	Maize	cytosol, nucleus, plastid	18.34	17.42

Protein Annotations

EnsemblPlants:Zm00001d052639_P001	EnsemblPlants:Zm00001d052639_T001	EnsemblPlantsGene:Zm00001d052639	EntrezGene:103654395	Gene3D:3.30.40.10	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR42647	PANTHER:PTHR42647:SF6
PFAM:PF13920	PFscan:PS50089	ProteinID:AQK57564.1	SEG:seg	UniParc:UPI0002213DAE	UniProt:K7U3P8
MapMan:35.2	:	:	:	:	:

Description

Putative RING zinc finger domain superfamily protein

Coordinates

chr4:-:195500434..195501450

Molecular Weight (calculated)

34336.7 Da

IEP (calculated)

7.258

GRAVY (calculated)

-0.067

Length

338 amino acids

Sequence
(BLAST)

001: MAVQAQFGGL AAGCLLPYGG GGGLAEEQLH LQALLSAAAG SKAAQQQRHC AAGVASAAQS ELTCNGVVGL GGVVASRKRG RDGELEEYQQ YVPPSSTALL
101: PIPGAHHQRP AAGSVPMAAA TATTSGRALL VVVAEAELRR QGAEVDALVR AGCERLRAGL ERARGRQREA VARAAARALR EKEAELAAAR ARAAELEERL
201: RLAAAEAQAW CGLARSNEAA ASGLRATLDA LLLRCAGAAG GGATGGAATR PAATAAEEVE EGFGESGGTD NDAESCCFGG DAASPARWAW CRACGEREAS
301: VLLLPCRHLC LCKACEPRTD ACPVCSGAKN TAIHIAPN

Best Arabidopsis Sequence Match ( AT1G60610.1 )
(BLAST)

001: MLGGNNDNPV PQVLMNDSQF RYQSNTSLNQ LHLLGTMRAG CTIDPVNYFA NDNLAPMMRL NSTRGRETEN NNIMQRQQKL QISLNYNYNN NNTVVQDEVP
101: KQNLVSTGLR LSYDDDERNS SVTSANGSIT TPVYQSLGDN IRLDLNRQND ELDQFIKFRA DQMAKGVRDI KQRHVTSFVT ALEKDVSKKL QEKDHEIESM
201: NKKNRELVDK IKQVAVEAQN WHYKAKYNES VVNALKVNLQ QVMSHGNDNN AVGGGVADHH QMKEGFGDSE IDDEAASYNY LNIPGMPSTG MRCKLCNVKN
301: VSVLLVPCRH LSLCKDCDVF TGVCPVCQSL KTSSVQVFFF

Arabidopsis Description

At1g60610 [Source:UniProtKB/TrEMBL;Acc:Q4TU35]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.