Factsheet for Os11t0542100-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 2
peroxisome 1
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus, peroxisome, plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU83596	Sorghum	cytosol, extracellular	47.71	50.49
OQU83597	Sorghum	cytosol	51.38	49.56
Zm00001d052639_P001	Maize	extracellular	49.85	48.22
Zm00001d052640_P001	Maize	cytosol, extracellular, nucleus	43.43	47.97
Os11t0543100-01	Rice	cytosol	24.77	40.7
Os04t0402500-00	Rice	cytosol	38.53	39.87
Os04t0403200-01	Rice	nucleus	39.45	37.18
GSMUA_Achr10P...	Banana	nucleus	30.58	31.45
GSMUA_Achr6P16260_001	Banana	nucleus	30.89	29.97
GSMUA_Achr6P08300_001	Banana	plastid	28.13	26.59
Os02t0246101-00	Rice	cytosol	12.54	23.7
Os02t0687500-01	Rice	cytosol, nucleus, plastid	22.02	22.64
Os10t0565500-01	Rice	nucleus	22.63	21.08
Os02t0130300-02	Rice	cytosol, nucleus, plastid	20.18	19.24
Os03t0263800-01	Rice	nucleus, plastid	18.96	18.13

Protein Annotations

EMBL:AK241433	EnsemblPlants:Os11t0542100-01	EnsemblPlantsGene:Os11g0542100	EntrezGene:9267164	Gene3D:3.30.40.10	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR42647	PANTHER:PTHR42647:SF6
PFAM:PF13920	PFscan:PS50089	ProteinID:BAH95312.1	ProteinID:BAT14343.1	RefSeq:XP_015617302.1	SEG:seg
UniParc:UPI000188AF69	UniProt:B7F8T2	MapMan:35.2	:	:	:

Description

Zinc finger, RING-type domain containing protein. (Os11t0542100-01)

Coordinates

chr11:-:19874927..19876378

Molecular Weight (calculated)

33386.7 Da

IEP (calculated)

7.790

GRAVY (calculated)

0.010

Length

327 amino acids

Sequence
(BLAST)

001: MAGGGEFVVA AEEYYGALVA KAAMAKNGYN CGGAAVVSGG AQSGLTCNNG GGGGVVVSRK RGREVEQQYY VPPSSAVLLP IPGMVVAPAA DVAASRFVES
101: GMACTSGRAA AAAFGDALAS EVFIQSGEID AVVRAECERL RAGVEQARKR QCQALVRAAA AAASRRLQET ESQLAAARRR AADLEERLRQ AAAESQAWCG
201: LARSNEAVAA GLRATLDHLL LRAAAAPPCA PVEGCGESDG PNTADDDAQS CCFETTATKT NTRRGGGVGV GGGRWGCKAC GEREAAVLLL PCRHLCLCRA
301: CEARAEACPV CLAVKKVSVV ARSPADV

Best Arabidopsis Sequence Match ( AT1G32740.1 )
(BLAST)

001: MAVQAQHHSS NLLFLNKRNG KEKEHSNFTL QSQAAGDFLD QTNMLFNNGS SNQRKRRRET NNHQLLPMQS HQFPQVIDLS LLHNYNHPPS NMVHTGLRLF
101: SGEDQAQKIS HLSEDVFAAH INRQSEELDE FLHAQAEELR RTLAEKRKMH YKALLGAVEE SLVRKLREKE VEIERATRRH NELVARDSQL RAEVQVWQER
201: AKAHEDAAAS LQSQLQQAVN QCAGGCVSAQ DSRAAEEGLL CTTISGVDDA ESVYVDPERV KRPNCKACRE REATVVVLPC RHLSICPGCD RTALACPLCL
301: TLRNSSVEAI FC

Arabidopsis Description

SBP (S-ribonuclease binding protein) family protein [Source:UniProtKB/TrEMBL;Acc:Q8LCK5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.