Factsheet for Os04t0403200-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G290000.1	Wheat	cytosol	69.74	74.69
TraesCS2B01G306500.1	Wheat	cytosol	68.59	73.46
TraesCS2D01G287900.1	Wheat	cytosol	66.86	72.5
Os04t0402500-00	Rice	cytosol	61.96	68.04
Zm00001d010503_P001	Maize	cytosol, mitochondrion	24.21	65.12
EES10713	Sorghum	cytosol	64.55	64.37
Zm00001d004743_P001	Maize	plastid	29.39	61.82
Zm00001d026161_P001	Maize	cytosol	22.48	55.32
Os11t0542100-01	Rice	cytosol	37.18	39.45
Os02t0246101-00	Rice	cytosol	18.44	36.99
GSMUA_Achr10P...	Banana	nucleus	33.14	36.16
GSMUA_Achr6P16260_001	Banana	nucleus	33.43	34.42
GSMUA_Achr6P08300_001	Banana	plastid	32.85	32.95
Os10t0565500-01	Rice	nucleus	28.24	27.92
Os11t0543100-01	Rice	cytosol	15.85	27.64
Zm00001d003613_P002	Maize	nucleus	32.56	26.04
Os02t0687500-01	Rice	cytosol, nucleus, plastid	22.77	24.84
Os03t0263800-01	Rice	nucleus, plastid	21.33	21.64
Os02t0130300-02	Rice	cytosol, nucleus, plastid	20.46	20.7

Protein Annotations

EMBL:AK120702	EnsemblPlants:Os04t0403200-01	EnsemblPlantsGene:Os04g0403200	EntrezGene:4335736	Gene3D:3.30.40.10	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR42647	PANTHER:PTHR42647:SF2
PFAM:PF13920	PFscan:PS50089	ProteinID:BAF14610.1	ProteinID:BAS89057.1	ProteinID:CAE02022.2	RefSeq:XP_015633677.1
SEG:seg	UniParc:UPI00001B0F65	UniProt:Q7XSC9	MapMan:35.2	:	:

Description

SKIP interacting protein 23, SKIPa-interacting protein 23, SKIPa-interacting protein 23Zinc finger, RING-type domain containing protein. (Os04t0403200-01)

Coordinates

chr4:+:19994477..19996158

Molecular Weight (calculated)

35510.1 Da

IEP (calculated)

6.171

GRAVY (calculated)

-0.020

Length

347 amino acids

Sequence
(BLAST)

001: MAVQAQYLSH ASFPHDLYGL RALEGATAAG SLFLDDHGGC APATPAAAAA GIGHTVLSDL PRSELTCNDN NGAGYGFVPR KRARLDADES AGALMAAAAA
101: QQQRMVLPPH GLVFPGDVQS RAVGCGAAST SGRAGNAAGL SQGLLSQLYH QGVEIDALVR LESERMRAGL EEARRRHVRA VVSTVERAAA GRLRAAEAEL
201: ERARCRNMEL EERLRQMTAE GQAWLSVAKS HEAVAAGLRA TLDQLLQSPC AALAVAGAAG AGGAEGDAED AQSCCYETPC GGDNAGADDA ASKTPAAALC
301: KACGAGEASM LLLPCRHLCL CRGCEAAVDA CPVCAATKNA SLHVLLS

Best Arabidopsis Sequence Match ( AT3G12920.1 )
(BLAST)

001: MAVEAHHLNP LFSSNREMIH PVEASGVVYN TQMRYGTVPT FNPTVECQTS LFNPIYNISP VDRLVHQSMK PTIQSVDSSL TFNSDNNVDF LRPVSSRKRS
101: REESVVLNPS AYMQIQKNPT DPLMFLGQDL SSNVQQHHFD IDRLISNHVE RMRMEIEEKR KTQGRRIVEA VEQGLMKTLR AKDDEINHIG KLNLFLEEKV
201: KSLCVENQIW RDVAQSNEAT VNALRSNLQQ VLAAVERNRW EEPPTVADDA QSCCGSNDEG DSEEERWKLA GEAQDTKKMC RVGMSMCRSC GKGEASVLLL
301: PCRHMCLCSV CGSSLNTCPI CKSPKTASLH VNLSS

Arabidopsis Description

BRG3Probable BOI-related E3 ubiquitin-protein ligase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDD1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.