Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG38894 | Sorghum | cytosol, mitochondrion, nucleus | 68.38 | 68.97 |
| Zm00001d029988_P001 | Maize | cytosol, mitochondrion, nucleus | 65.81 | 68.75 |
| Zm00001d047069_P001 | Maize | cytosol | 64.1 | 67.77 |
| TraesCS1A01G215300.1 | Wheat | cytosol | 59.54 | 64.51 |
| TraesCS1D01G217800.1 | Wheat | cytosol | 58.97 | 64.49 |
| HORVU1Hr1G054930.3 | Barley | cytosol | 58.97 | 63.11 |
| TraesCS1B01G228800.1 | Wheat | cytosol | 58.4 | 62.88 |
| GSMUA_Achr2P12040_001 | Banana | plastid | 36.75 | 47.96 |
| GSMUA_Achr1P00560_001 | Banana | nucleus | 39.03 | 47.4 |
| GSMUA_Achr4P21690_001 | Banana | nucleus | 41.6 | 45.06 |
| GSMUA_Achr4P30100_001 | Banana | plastid | 39.03 | 44.92 |
| GSMUA_Achr2P18250_001 | Banana | nucleus | 42.17 | 44.85 |
| Os02t0687500-01 | Rice | cytosol, nucleus, plastid | 39.89 | 44.03 |
| KRH77271 | Soybean | plastid | 39.6 | 43.17 |
| KRH28216 | Soybean | nucleus | 39.6 | 42.25 |
| GSMUA_Achr8P14860_001 | Banana | nucleus | 40.17 | 41.84 |
| Solyc08g077460.2.1 | Tomato | nucleus | 40.74 | 41.09 |
| VIT_02s0012g00290.t01 | Wine grape | cytosol, nucleus, plastid | 39.32 | 40.95 |
| PGSC0003DMT400004642 | Potato | nucleus | 39.89 | 40.46 |
| Solyc06g061020.2.1 | Tomato | nucleus | 37.89 | 40.18 |
| Solyc08g007120.2.1 | Tomato | nucleus | 37.89 | 40.18 |
| KRH57556 | Soybean | nucleus | 39.03 | 39.14 |
| KRH04275 | Soybean | nucleus | 39.6 | 38.94 |
| PGSC0003DMT400068387 | Potato | nucleus | 37.04 | 38.01 |
| CDX77733 | Canola | nucleus | 31.91 | 37.33 |
| Bra024967.1-P | Field mustard | plastid | 26.21 | 37.25 |
| CDY33511 | Canola | nucleus | 31.91 | 36.96 |
| PGSC0003DMT400052841 | Potato | nucleus | 36.47 | 36.68 |
| AT5G47050.1 | Thale cress | nucleus | 31.34 | 36.67 |
| AT1G32740.1 | Thale cress | nucleus | 32.48 | 36.54 |
| Bra017511.1-P | Field mustard | nucleus | 31.34 | 36.42 |
| CDY43447 | Canola | nucleus | 31.34 | 36.42 |
| CDY09609 | Canola | cytosol | 25.07 | 35.63 |
| CDY37172 | Canola | cytosol | 30.48 | 35.43 |
| CDY51856 | Canola | cytosol | 29.91 | 34.65 |
| CDX90458 | Canola | cytosol | 29.34 | 33.88 |
| CDY03162 | Canola | cytosol | 30.77 | 33.54 |
| AT4G17680.1 | Thale cress | nucleus | 29.91 | 33.44 |
| Bra022093.1-P | Field mustard | nucleus | 20.23 | 32.27 |
| Os04t0402500-00 | Rice | cytosol | 27.07 | 30.06 |
| Bra012650.1-P | Field mustard | nucleus | 28.21 | 28.37 |
| Os04t0403200-01 | Rice | nucleus | 27.92 | 28.24 |
| Os11t0542100-01 | Rice | cytosol | 21.08 | 22.63 |
| Os02t0130300-02 | Rice | cytosol, nucleus, plastid | 21.08 | 21.57 |
| Os03t0263800-01 | Rice | nucleus, plastid | 19.94 | 20.47 |
| Os11t0543100-01 | Rice | cytosol | 9.12 | 16.08 |
| Os02t0246101-00 | Rice | cytosol | 7.69 | 15.61 |
Protein Annotations
| EnsemblPlants:Os10t0565500-01 | EnsemblPlantsGene:Os10g0565500 | EntrezGene:4349419 | Gene3D:3.30.40.10 | InterPro:E3ligase_BOI_like | InterPro:IPR001841 |
| InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR42647 | PANTHER:PTHR42647:SF13 |
| PFAM:PF13920 | PFscan:PS50089 | PIRSF:PIRSF036836 | ProteinID:BAT12106.1 | RefSeq:XP_015613148.1 | SEG:seg |
| UniParc:UPI00018F18A7 | UniProt:A0A0N7KS84 | MapMan:35.2 | : | : | : |
Description
Similar to Retrotransposon protein. (Os10t0565500-01)
Coordinates
chr10:-:22373332..22374952
Molecular Weight (calculated)
37890.3 Da
IEP (calculated)
7.453
GRAVY (calculated)
-0.574
Length
351 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVQAHYHHH HHHQQQHQPP PLFLARGVVV SPETTRPAGM EYHYQQHQQP PLFLDFSHGD GDGGNSRKRP READAAAAMV AAPPPQMLSL QPQAQAQGHK
101: VVSLAQLHNK RPPASTGLRL DFDDGGSEHV STTTTSSASS LLSDELATQF DRCKNEMARM FQDHTERLRR ALGEVRRRHY RSLLGAAEAA AARRMREKEA
201: EASNAARRGA ELEERVARLR AEAAAWQAKA LADQSTAAAL HAQLQQAAAA AAQARGSKSP EDDDNINPNA AAADDAESGF VDPDRVEEVT PPPPPSRPCR
301: TCRARPSSVV LLPCRHLCVC EACEPAVSTA IAAACPTCRG AVTGTVQVFI S
101: VVSLAQLHNK RPPASTGLRL DFDDGGSEHV STTTTSSASS LLSDELATQF DRCKNEMARM FQDHTERLRR ALGEVRRRHY RSLLGAAEAA AARRMREKEA
201: EASNAARRGA ELEERVARLR AEAAAWQAKA LADQSTAAAL HAQLQQAAAA AAQARGSKSP EDDDNINPNA AAADDAESGF VDPDRVEEVT PPPPPSRPCR
301: TCRARPSSVV LLPCRHLCVC EACEPAVSTA IAAACPTCRG AVTGTVQVFI S
001: MPLLSDNERI GLFSDSSMAI QAQHPSRFFF NNSNGQEASD CSLQPQDTPF TNFTKAGVDS RKRSREVYSS ALMNPPPPKP SQVIDITELL QKTPNVVSTG
101: LRLFHDQSQN QQQFFSSLPG DVTGKIKRQR DELDRFIQTQ GEELRRTLAD NRERRYVELL CAAEEIVGRK LRKKEAELEK ATRRHAELEA RVAHIVEEAR
201: NWQLRAATRE AEVSSLHAHL QQAIANRLDT AAKQSTFGED GGDAEEAEDA ESVYVDPERI ELIGPSCRIC RRKSATVMAL PCQHLILCNG CDVGAVRVCP
301: ICLAVKTSGV EVLF
101: LRLFHDQSQN QQQFFSSLPG DVTGKIKRQR DELDRFIQTQ GEELRRTLAD NRERRYVELL CAAEEIVGRK LRKKEAELEK ATRRHAELEA RVAHIVEEAR
201: NWQLRAATRE AEVSSLHAHL QQAIANRLDT AAKQSTFGED GGDAEEAEDA ESVYVDPERI ELIGPSCRIC RRKSATVMAL PCQHLILCNG CDVGAVRVCP
301: ICLAVKTSGV EVLF
Arabidopsis Description
SBP (S-ribonuclease binding protein) family protein [Source:UniProtKB/TrEMBL;Acc:Q8L7G9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.