Factsheet for Os05t0168300-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0674800-01
Os04t0386300-01
Os04t0569100-01
Os09t0526300-00
Os12t0538300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10970.1	Os04t0386300-01	AT3G48550.1	21798944
AT3G10970.1	Os02t0674800-01	AT3G61150.1	21798944
AT3G10970.1	Os04t0569100-01	AT3G61150.1	21798944
AT3G10970.1	Os09t0526300-00	AT3G61150.1	21798944
AT3G10970.1	Os12t0538300-01	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG21417	Sorghum	plastid	88.45	87.71
TraesCS1D01G113400.1	Wheat	plastid	87.89	87.64
TraesCS1B01G132100.1	Wheat	plastid	87.61	87.36
TraesCS1A01G111900.1	Wheat	plastid	87.61	87.36
HORVU1Hr1G024580.5	Barley	plastid	87.61	84.28
Zm00001d037512_P001	Maize	cytosol	83.1	73.38
GSMUA_Achr10P...	Banana	plastid	70.99	70.0
CDY69318	Canola	cytosol	17.46	69.66
AT3G10970.1	Thale cress	plastid	65.35	63.56
VIT_13s0067g02440.t01	Wine grape	plastid	63.1	62.22
KRG97648	Soybean	plastid	63.66	61.92
Bra029883.1-P	Field mustard	plastid	63.1	61.54
KRH31223	Soybean	plastid	63.38	61.48
CDY00981	Canola	plastid	62.54	61.33
Solyc06g050310.2.1	Tomato	plastid	61.97	61.28
CDY08561	Canola	plastid	62.82	61.26
Os09t0569100-01	Rice	plastid	27.61	25.59
Os04t0557000-01	Rice	plastid	20.85	21.14

Protein Annotations

Gene3D:1.10.150.240	Gene3D:3.40.50.1000	MapMan:35.1	EntrezGene:4337922	ProteinID:AAV25241.1	EMBL:AK066130
ProteinID:BAF16667.1	ProteinID:BAS92454.1	ProteinID:EEE62470.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016311	GO:GO:0016787	GO:GO:0016791	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023198
InterPro:IPR023214	EnsemblPlantsGene:Os05g0168300	EnsemblPlants:Os05t0168300-01	PFAM:PF13419	InterPro:PGP-like_dom2	PANTHER:PTHR18901
PANTHER:PTHR18901:SF29	UniProt:Q60DU2	SUPFAM:SSF56784	UniParc:UPI000044D43C	RefSeq:XP_015637718.1	SEG:seg

Description

Haloacid dehalogenase-like hydrolase domain containing protein. (Os05t0168300-01)

Coordinates

chr5:-:4096771..4100732

Molecular Weight (calculated)

39937.2 Da

IEP (calculated)

7.168

GRAVY (calculated)

-0.238

Length

355 amino acids

Sequence
(BLAST)

001: MESCSFRTAA SPSPFPSLPS SSRQAPPCSS LRFPRPRNGR MVGVRRRASG FEAFPPLPGK VFVEEAIGAE YGEGFETFRM DGPLKVDVDY LNEKLQECFL
101: QRIRHAMKPD EACGLIFSWD NVIADTDSLK LDAWRQLALE EGKDIPNAGH VQKSILHGAA DHVLRKVLCW AKDESQMERL KARLIELYYE NLFKLDTPVN
201: GLREWLDAVQ TAGIPCAVAS SLDRRCMIEA LDRMELSKYF KAIVTDEDDM ESIAHRFLSA AMKLDRKPSK CVVFEDDPRG VTAAHNCTMM AVALIGAHPA
301: YELVQADLAI AKYSELSVIN LRRLFAHKGL SFMDLQKQII ERSPPKRKLT VDTIF

Best Arabidopsis Sequence Match ( AT3G10970.1 )
(BLAST)

001: MDCSCSTRPS SLLISSEPSF RFPHSNFSSN LSFQIPKDTK LVKQRLVVRS SSGSDYQNGD VNGFPLKPNK LFMQEAIGAE YGEGFETFRQ DGPLKVDVDF
101: WNEKLQDGFL QRIRYAMKPD EAYGLIFSWD NVVADTRSLK LEAWKQLAAE EGKEITEEVD IQRLMLYAGA DHVLRKVLFW EKTQSKIDRL KLRLSEIYYD
201: SLLKLTEPKE GLRDWLDAVT TARIPCAVVS NLDRKNMINA LERMGLQKYF QAVVSEEDGM ESIAHRFLSA AVKLDRKPSK CVVFEDDPRG ITAAHNCTMM
301: AVGLIGAHRA YDLVQADLAV GNFYELSVIN LRRLFANKGS TFMDHEKQII EKSPPKRKLT IDTIF

Arabidopsis Description

Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J510]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.