Factsheet for Os04t0557000-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G409700.1	Wheat	plastid	72.57	73.62
TraesCS2D01G407000.1	Wheat	plastid	69.43	70.43
TraesCS2B01G428100.1	Wheat	plastid	69.43	70.43
OQU75828	Sorghum	plastid	69.43	70.43
KXG26871	Sorghum	cytosol	21.43	61.98
Zm00001d026148_P002	Maize	endoplasmic reticulum	66.57	52.6
GSMUA_Achr5P20620_001	Banana	plastid	38.86	38.75
CDY13271	Canola	plastid	38.0	36.54
Bra035213.1-P	Field mustard	plastid	37.14	36.21
CDX86769	Canola	plastid	37.14	36.21
VIT_02s0025g03520.t01	Wine grape	cytosol	37.71	35.77
Os09t0569100-01	Rice	plastid	38.29	34.99
KRH59874	Soybean	plastid	36.86	34.22
KRH41172	Soybean	plastid	36.86	34.22
AT4G11570.2	Thale cress	cytosol, plastid	36.29	34.05
Solyc08g081030.1.1	Tomato	cytosol, plastid	36.29	33.42
PGSC0003DMT400031825	Potato	cytosol, plastid	36.0	33.16
Os05t0168300-01	Rice	plastid	21.14	20.85

Protein Annotations

Gene3D:1.10.150.240	Gene3D:3.40.50.1000	EntrezGene:4336633	MapMan:7.10.5	EMBL:AK067832	ProteinID:BAF15443.1
ProteinID:BAS90441.1	ProteinID:CAD41650.2	ProteinID:CAE03477.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016311	GO:GO:0016787	GO:GO:0016791	InterPro:HAD-SF_hydro_IA	InterPro:HAD-like_sf	InterPro:HAD_sf
InterPro:IPR023198	InterPro:IPR023214	EnsemblPlantsGene:Os04g0557000	EnsemblPlants:Os04t0557000-01	PFAM:PF13419	InterPro:PGP-like_dom2
PANTHER:PTHR18901	PANTHER:PTHR18901:SF46	UniProt:Q7XTZ9	SUPFAM:SSF56784	TIGRFAMs:TIGR01509	UniParc:UPI00001B1748
RefSeq:XP_015634163.1	RefSeq:XP_015634164.1	SEG:seg	:	:	:

Description

Similar to Genetic modifier. (Os04t0557000-01)

Coordinates

chr4:+:27868084..27870370

Molecular Weight (calculated)

39668.8 Da

IEP (calculated)

5.912

GRAVY (calculated)

-0.273

Length

350 amino acids

Sequence
(BLAST)

001: MIFSVSLFGS SHQSIHKLYR KCWSSNSHST LNVLSLAKTV GQSMRMKRIR VKPHATDLKN RPQAHEDNVF YKLVYRLPEN LSWLLASPEM ARRPPSKKKL
101: KKEEMVSSNQ FGVILEWEGV VVEDDDPDLE PRVWYVLSLE EAKSFPPDAV LKEIEGMRTD QAILEVLHWS EDPQEVQRLA ARKEVIYKTL RGRFYQLRPG
201: VLDFLNTLVD FDIPIAITTP RPRLSLEEGI KAVGLQGYFD AIVAAEDFCR GKPEGEMFEV TAGQLGLEPD VCLVLGNSNS TIESAHTAGM RCVAVASRYP
301: AYELQAANHV VRWLDQLSVA DLQRIANGEI LGLRGRRSDM DMDMEIVIEE

Best Arabidopsis Sequence Match ( AT4G11570.1 )
(BLAST)

001: MAEAIGAVSL VGHRPSIVRI TVKNELKTQK SQSIVRFPVK VDYSAKGVLS HLMTQSVKKN RMSVFPIRAL AMELTKEKKK DDRLPKTWNY LDSGADDKPS
101: LWPPENKADK PSLHNPLLRQ ERMGCGWLGA IFEWEGVLIE DNPDLDNQSW LTLAQEEGKS PPPAFMLRRV EGMKNEQAIS EVLCWSRDPV QVRRMAKRKE
201: EIFKALHGGV YRLRDGSQEF VNVLMNNKIP MALVSTRPRE TLENAVGSIG IRKFFSVIVA SEDVYRGKPD PEMFIYAAQL LDFIPERCIV FGNSNQTIEA
301: AHDGRMKCVA VASKHPIYEL GAAELVVRRL DELSIIDLKK LADTDLTEFE PELEMEKEDE RELPSSAVAV DDF

Arabidopsis Description

PYRP25-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LDD5]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.