CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86769	Canola	plastid	91.76	93.04
AT4G11570.2	Thale cress	cytosol, plastid	81.04	79.09
VIT_02s0025g03520.t01	Wine grape	cytosol	67.03	66.12
KRH59874	Soybean	plastid	64.84	62.6
HORVU2Hr1G013970.1	Barley	cytosol	17.31	62.38
Solyc08g081030.1.1	Tomato	cytosol, plastid	63.19	60.53
PGSC0003DMT400031825	Potato	cytosol, plastid	63.19	60.53
KRH41172	Soybean	plastid	62.09	59.95
KXG35130	Sorghum	plastid	56.04	53.4
Os09t0569100-01	Rice	plastid	55.77	53.0
TraesCS4B01G009800.1	Wheat	plastid	55.49	52.74
GSMUA_Achr7P04430_001	Banana	plastid	49.45	52.63
TraesCS4D01G006200.1	Wheat	plastid	54.95	52.22
GSMUA_Achr3P14430_001	Banana	cytosol	55.49	52.2
Zm00001d005329_P001	Maize	plastid	55.22	52.07
TraesCS4A01G307800.1	Wheat	plastid	54.4	51.97
HORVU4Hr1G000510.1	Barley	plastid	54.67	51.42
GSMUA_Achr1P17450_001	Banana	cytosol, golgi, plastid	55.77	46.45
Os04t0557000-01	Rice	plastid	36.54	38.0
OQU75828	Sorghum	plastid	35.99	37.97
TraesCS2A01G409700.1	Wheat	plastid	35.99	37.97
TraesCS2B01G428100.1	Wheat	plastid	35.71	37.68
TraesCS2D01G407000.1	Wheat	plastid	35.44	37.39
GSMUA_Achr5P20620_001	Banana	plastid	35.99	37.32
KXG26871	Sorghum	cytosol	11.54	34.71
HORVU7Hr1G058150.1	Barley	plastid	25.55	30.49
Zm00001d026148_P002	Maize	endoplasmic reticulum	35.99	29.57
CDY69318	Canola	cytosol	7.14	29.21
CDY08561	Canola	plastid	23.63	23.63
CDY00981	Canola	plastid	23.08	23.2

Protein Annotations

Gene3D:1.10.150.240	Gene3D:3.40.50.1000	MapMan:7.10.5	GO:A0A078FJ98	UniProt:A0A078FJ98	EnsemblPlants:CDY13271
ProteinID:CDY13271	ProteinID:CDY13271.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00071227001	InterPro:HAD-SF_hydro_IA	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023198
InterPro:IPR023214	PFAM:PF13419	InterPro:PGP-like_dom2	PANTHER:PTHR18901	PANTHER:PTHR18901:SF4	SUPFAM:SSF56784
TIGRFAMs:TIGR01509	UniParc:UPI0004EE8375	SEG:seg	:	:	:

Description

BnaC09g23850DBnaC09g23850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FJ98]

Coordinates

chrLK032033:+:461937..463512

Molecular Weight (calculated)

41140.6 Da

IEP (calculated)

6.535

GRAVY (calculated)

-0.381

Length

364 amino acids

Sequence
(BLAST)

001: MADAVSLVGH RPSIARISVK NEARTQRSQN TVRFRVKGVV FDKVQSVIKK PIRALAMELT KEMPAYKNKD ERKLPRTWNY LDSGSVDKPG LWPPENKADK
101: PSLHNPLLRQ ERMGCGWLGA IFEWEGVLIE DSPDLESQSW LTLAQEEGKS PPPAFILRRI EGMKNEQAIS EVLCWSRDPA QVRRIASRKE EIFKALHGGV
201: YRLRDGSQEF VNVLMNNKIP MALVSTRPRE TLENAIGSIG IKKFFSVIVA SEDVHRGKPD PEMFVYAAQL LDFIPERCIV FGNSNQTIEA AHDGKMKCVA
301: VASKHPMYEL GAADLVVRRL DELSVIDLKK LAAVELTEFE PELEMEKEDE RELPSSNVAV DDFF

Best Arabidopsis Sequence Match ( AT4G11570.1 )
(BLAST)

001: MAEAIGAVSL VGHRPSIVRI TVKNELKTQK SQSIVRFPVK VDYSAKGVLS HLMTQSVKKN RMSVFPIRAL AMELTKEKKK DDRLPKTWNY LDSGADDKPS
101: LWPPENKADK PSLHNPLLRQ ERMGCGWLGA IFEWEGVLIE DNPDLDNQSW LTLAQEEGKS PPPAFMLRRV EGMKNEQAIS EVLCWSRDPV QVRRMAKRKE
201: EIFKALHGGV YRLRDGSQEF VNVLMNNKIP MALVSTRPRE TLENAVGSIG IRKFFSVIVA SEDVYRGKPD PEMFIYAAQL LDFIPERCIV FGNSNQTIEA
301: AHDGRMKCVA VASKHPIYEL GAAELVVRRL DELSIIDLKK LADTDLTEFE PELEMEKEDE RELPSSAVAV DDF

Arabidopsis Description

PYRP25-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LDD5]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.