Factsheet for TraesCS4D01G006200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G307800.1	Wheat	plastid	95.3	95.8
TraesCS4B01G009800.1	Wheat	plastid	94.78	94.78
HORVU4Hr1G000510.1	Barley	plastid	91.91	90.96
HORVU2Hr1G013970.1	Barley	cytosol	20.89	79.21
KXG35130	Sorghum	plastid	74.93	75.13
Os09t0569100-01	Rice	plastid	74.93	74.93
Zm00001d005329_P001	Maize	plastid	74.41	73.83
GSMUA_Achr3P14430_001	Banana	cytosol	59.53	58.91
GSMUA_Achr7P04430_001	Banana	plastid	52.48	58.77
HORVU7Hr1G058150.1	Barley	plastid	45.95	57.7
VIT_02s0025g03520.t01	Wine grape	cytosol	54.57	56.64
KRH59874	Soybean	plastid	54.83	55.7
CDX86769	Canola	plastid	51.7	55.15
Bra035213.1-P	Field mustard	plastid	51.7	55.15
CDY13271	Canola	plastid	52.22	54.95
KRH41172	Soybean	plastid	52.74	53.58
GSMUA_Achr1P17450_001	Banana	cytosol, golgi, plastid	61.1	53.55
AT4G11570.2	Thale cress	cytosol, plastid	51.7	53.08
PGSC0003DMT400031825	Potato	cytosol, plastid	52.48	52.89
Solyc08g081030.1.1	Tomato	cytosol, plastid	52.48	52.89
TraesCS2D01G407000.1	Wheat	plastid	33.68	37.39
TraesCS1D01G113400.1	Wheat	plastid	24.54	26.4

Protein Annotations

EnsemblPlants:TraesCS4D01G006200.1	EnsemblPlantsGene:TraesCS4D01G006200	Gene3D:1.10.150.240	Gene3D:3.40.50.1000	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:HAD-SF_hydro_IA	InterPro:HAD-like_sf	InterPro:HAD_sf
InterPro:IPR023198	InterPro:IPR023214	InterPro:PGP-like_dom2	PANTHER:PTHR18901	PANTHER:PTHR18901:SF4	PFAM:PF13419
SEG:seg	SUPFAM:SSF56784	TIGR:cd07505	TIGRFAMs:TIGR01509	MapMan:7.10.5	:

Description

No Description!

Coordinates

chr4D:-:3403377..3404528

Molecular Weight (calculated)

42134.2 Da

IEP (calculated)

5.127

GRAVY (calculated)

-0.268

Length

383 amino acids

Sequence
(BLAST)

001: MMMVDTVSAS TSFIARHPFD HHRPHRTLLH VVSCRPLATP FAGRRLVARR QPSLPAQQRL ADWPVRALAA VGFTKEAVPR KEFRGIPGDG DNGLGTDDDA
101: PPAAVPSWPP RNRADDPSLH NPLLRLERMG CGWVGVIFEW EGVVVEDDTR LERQAWLTLA EEEGKSPPPA FVLRRVEGMK AEHAVSEVLC WSRDPSELRR
201: LAARKEEIHG GLRGAASQMR DGSREFMSTL VNYKIPLAVA STRPRKAVEA AIEAVGARGF FDAVVAAEDV YRGKPDPELF LYAAQLLGFI PERCVVFGNS
301: NSAVEAAHDA RMKCVAVASK HPVYELGAAD LVVKRLDELS VVDLKNLADI DSPEFGMEPE PEMEEEEDEA PPSTAVGVDD IFL

Best Arabidopsis Sequence Match ( AT4G11570.1 )
(BLAST)

001: MAEAIGAVSL VGHRPSIVRI TVKNELKTQK SQSIVRFPVK VDYSAKGVLS HLMTQSVKKN RMSVFPIRAL AMELTKEKKK DDRLPKTWNY LDSGADDKPS
101: LWPPENKADK PSLHNPLLRQ ERMGCGWLGA IFEWEGVLIE DNPDLDNQSW LTLAQEEGKS PPPAFMLRRV EGMKNEQAIS EVLCWSRDPV QVRRMAKRKE
201: EIFKALHGGV YRLRDGSQEF VNVLMNNKIP MALVSTRPRE TLENAVGSIG IRKFFSVIVA SEDVYRGKPD PEMFIYAAQL LDFIPERCIV FGNSNQTIEA
301: AHDGRMKCVA VASKHPIYEL GAAELVVRRL DELSIIDLKK LADTDLTEFE PELEMEKEDE RELPSSAVAV DDF

Arabidopsis Description

PYRP25-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LDD5]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.