Factsheet for VIT_02s0025g03520.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59874	Soybean	plastid	75.88	74.27
KRH41172	Soybean	plastid	73.98	72.41
Solyc08g081030.1.1	Tomato	cytosol, plastid	73.17	71.05
PGSC0003DMT400031825	Potato	cytosol, plastid	72.63	70.53
Bra035213.1-P	Field mustard	plastid	65.58	67.41
CDX86769	Canola	plastid	65.58	67.41
CDY13271	Canola	plastid	66.12	67.03
AT4G11570.2	Thale cress	cytosol, plastid	63.41	62.73
HORVU2Hr1G013970.1	Barley	cytosol	16.8	61.39
GSMUA_Achr3P14430_001	Banana	cytosol	60.43	57.62
Os09t0569100-01	Rice	plastid	59.62	57.44
KXG35130	Sorghum	plastid	59.08	57.07
GSMUA_Achr7P04430_001	Banana	plastid	52.85	57.02
Zm00001d005329_P001	Maize	plastid	58.81	56.22
TraesCS4B01G009800.1	Wheat	plastid	57.99	55.87
TraesCS4A01G307800.1	Wheat	plastid	57.18	55.38
TraesCS4D01G006200.1	Wheat	plastid	56.64	54.57
HORVU4Hr1G000510.1	Barley	plastid	56.37	53.75
GSMUA_Achr1P17450_001	Banana	cytosol, golgi, plastid	61.52	51.95
GSMUA_Achr5P20620_001	Banana	plastid	38.75	40.74
TraesCS2B01G428100.1	Wheat	plastid	37.67	40.29
TraesCS2D01G407000.1	Wheat	plastid	37.67	40.29
OQU75828	Sorghum	plastid	37.4	40.0
TraesCS2A01G409700.1	Wheat	plastid	37.13	39.71
Os04t0557000-01	Rice	plastid	35.77	37.71
KXG26871	Sorghum	cytosol	12.2	37.19
HORVU7Hr1G058150.1	Barley	plastid	26.56	32.13
Zm00001d026148_P002	Maize	endoplasmic reticulum	38.21	31.83
VIT_13s0067g02440.t01	Wine grape	plastid	23.58	24.17

Protein Annotations

Gene3D:1.10.150.240	EntrezGene:100261521	wikigene:100261521	Gene3D:3.40.50.1000	MapMan:7.10.5	EMBL:AM451504
ProteinID:CAN82996	ProteinID:CAN82996.1	ProteinID:CBI34671	ProteinID:CBI34671.3	UniProt:D7TVZ6	EMBL:FN596251
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009231	GO:GO:0009987	GO:GO:0016311	GO:GO:0016787	GO:GO:0016791
GO:GO:0019538	GO:GO:0043621	InterPro:HAD-SF_hydro_IA	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023198
InterPro:IPR023214	EntrezGene:LOC100261521	wikigene:LOC100261521	PFAM:PF13419	InterPro:PGP-like_dom2	PANTHER:PTHR18901
PANTHER:PTHR18901:SF4	SUPFAM:SSF56784	TIGR:TC58250	TIGRFAMs:TIGR01509	UniParc:UPI00015CD56D	ArrayExpress:VIT_02s0025g03520
EnsemblPlantsGene:VIT_02s0025g03520	EnsemblPlants:VIT_02s0025g03520.t01	unigene:Vvi.1506	RefSeq:XP_002273883	RefSeq:XP_002273883.1	RefSeq:XP_010660705.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2:+:3019598..3021661

Molecular Weight (calculated)

41472.9 Da

IEP (calculated)

6.197

GRAVY (calculated)

-0.341

Length

369 amino acids

Sequence
(BLAST)

001: MVDSIAATSL LGHRPLCGGL GLSCKDISYK RRLSDVCRFP LMEFLGRRIS ASPYLPRRRG GDRLGALSIK ALAMELTKEA HSYKEERIPR NLRYRIDTGI
101: DRKPGLWPPE NKADSSSLHN PLLRQERMGC GWLGAIFEWE GVIIEDNPDL ENQAWLALSQ EEGKSPPPAF ILRRIEGMKN EQAISEVLCW SRDPAQLRRM
201: ASRKEDIYQA LQGGMHRLRT GSQEFVNVLM NYKIPMALVS TRPRKTLETA IGTIGIESYF SVIVAAEDVY RGKPDPEMFV YAAQLLNFIP ERCIVFGNSN
301: LTVEAAHDAR MKCVAVASKH PVYELGAADL VVRHLDELSV VDLKNLADIE STEFGPGEPE TEMEREEDS

Best Arabidopsis Sequence Match ( AT4G11570.1 )
(BLAST)

001: MAEAIGAVSL VGHRPSIVRI TVKNELKTQK SQSIVRFPVK VDYSAKGVLS HLMTQSVKKN RMSVFPIRAL AMELTKEKKK DDRLPKTWNY LDSGADDKPS
101: LWPPENKADK PSLHNPLLRQ ERMGCGWLGA IFEWEGVLIE DNPDLDNQSW LTLAQEEGKS PPPAFMLRRV EGMKNEQAIS EVLCWSRDPV QVRRMAKRKE
201: EIFKALHGGV YRLRDGSQEF VNVLMNNKIP MALVSTRPRE TLENAVGSIG IRKFFSVIVA SEDVYRGKPD PEMFIYAAQL LDFIPERCIV FGNSNQTIEA
301: AHDGRMKCVA VASKHPIYEL GAAELVVRRL DELSIIDLKK LADTDLTEFE PELEMEKEDE RELPSSAVAV DDF

Arabidopsis Description

PYRP25-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LDD5]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.