CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005329_P001	Maize	plastid	93.72	92.75
Os09t0569100-01	Rice	plastid	83.77	83.55
TraesCS4A01G307800.1	Wheat	plastid	75.65	75.85
TraesCS4D01G006200.1	Wheat	plastid	75.13	74.93
TraesCS4B01G009800.1	Wheat	plastid	75.13	74.93
HORVU4Hr1G000510.1	Barley	plastid	75.65	74.68
HORVU2Hr1G013970.1	Barley	cytosol	18.85	71.29
GSMUA_Achr3P14430_001	Banana	cytosol	63.61	62.79
GSMUA_Achr7P04430_001	Banana	plastid	54.19	60.53
VIT_02s0025g03520.t01	Wine grape	cytosol	57.07	59.08
Bra035213.1-P	Field mustard	plastid	53.14	56.55
CDX86769	Canola	plastid	53.14	56.55
KRH59874	Soybean	plastid	55.5	56.23
CDY13271	Canola	plastid	53.4	56.04
GSMUA_Achr1P17450_001	Banana	cytosol, golgi, plastid	63.87	55.84
Solyc08g081030.1.1	Tomato	cytosol, plastid	54.97	55.26
PGSC0003DMT400031825	Potato	cytosol, plastid	54.71	55.0
KRH41172	Soybean	plastid	53.66	54.38
AT4G11570.2	Thale cress	cytosol, plastid	51.31	52.55
HORVU7Hr1G058150.1	Barley	plastid	37.43	46.89
KXG26871	Sorghum	cytosol	12.57	39.67
OQU75828	Sorghum	plastid	33.77	37.39
KXG21417	Sorghum	plastid	22.25	23.74

Protein Annotations

Gene3D:1.10.150.240	Gene3D:3.40.50.1000	MapMan:7.10.5	UniProt:A0A1B6QB22	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009231	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0043621
InterPro:HAD-SF_hydro_IA	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023198	InterPro:IPR023214	ProteinID:KXG35129.1
EnsemblPlants:KXG35130	ProteinID:KXG35130	ProteinID:KXG35130.1	PFAM:PF13419	InterPro:PGP-like_dom2	PANTHER:PTHR18901
PANTHER:PTHR18901:SF4	EnsemblPlantsGene:SORBI_3002G136100	SUPFAM:SSF56784	TIGRFAMs:TIGR01509	UniParc:UPI0001C80E33	SEG:seg

Description

hypothetical protein

Coordinates

chr2:+:20557490..20561203

Molecular Weight (calculated)

42467.6 Da

IEP (calculated)

5.953

GRAVY (calculated)

-0.349

Length

382 amino acids

Sequence
(BLAST)

001: MVVDTVSAST SIIAPHLFDH RSRGAGASHH HHLRHVVACR PLPTAFAGRR LVSRVNKQPS PRLADWPVRA LAMGITKEAS PRREYRGIPG DGGDMGDVGV
101: TSPKPSWPPQ NRADDPKLHN PLLRLERMGC GWLGVIFEWE GVIVEDDAEL ERQAWLTLAQ EEGKSPPPAF VLRRVEGMKN EQAISEVLCW SRDPSELRRL
201: ASRKEEIHNS LRGGSYHQMR NGSREFMSTL ANYKIPIAVA TTRPRKVIEE AIEAVGVRSF FDAVVAAEDV YRGKPDPEMF LYAAQLLSFI PERCIVFGNS
301: NSAVEAAHDA RMKCVAVASK HKIYELSAAD LVVKQLDELS VVDLKNLADI ESPEFGMEPE PEMEEEEVPP PSTSVGVDDL FW

Best Arabidopsis Sequence Match ( AT4G11570.1 )
(BLAST)

001: MAEAIGAVSL VGHRPSIVRI TVKNELKTQK SQSIVRFPVK VDYSAKGVLS HLMTQSVKKN RMSVFPIRAL AMELTKEKKK DDRLPKTWNY LDSGADDKPS
101: LWPPENKADK PSLHNPLLRQ ERMGCGWLGA IFEWEGVLIE DNPDLDNQSW LTLAQEEGKS PPPAFMLRRV EGMKNEQAIS EVLCWSRDPV QVRRMAKRKE
201: EIFKALHGGV YRLRDGSQEF VNVLMNNKIP MALVSTRPRE TLENAVGSIG IRKFFSVIVA SEDVYRGKPD PEMFIYAAQL LDFIPERCIV FGNSNQTIEA
301: AHDGRMKCVA VASKHPIYEL GAAELVVRRL DELSIIDLKK LADTDLTEFE PELEMEKEDE RELPSSAVAV DDF

Arabidopsis Description

PYRP25-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LDD5]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.