CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92716
EER99222
EES02604
EES05120
EES12026
KXG26935

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10970.1	EES05120	AT3G48550.1	21798944
AT3G10970.1	EES12026	AT3G48550.1	21798944
AT3G10970.1	EER99222	AT3G61150.1	21798944
AT3G10970.1	EES02604	AT3G61150.1	21798944
AT3G10970.1	KXG26935	AT3G61150.1	21798944
AT3G10970.1	EER92716	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0168300-01	Rice	plastid	87.71	88.45
TraesCS1D01G113400.1	Wheat	plastid	85.47	85.96
TraesCS1B01G132100.1	Wheat	plastid	84.92	85.39
TraesCS1A01G111900.1	Wheat	plastid	84.92	85.39
HORVU1Hr1G024580.5	Barley	plastid	85.47	82.93
Zm00001d037512_P001	Maize	cytosol	87.15	77.61
GSMUA_Achr10P...	Banana	plastid	68.44	68.06
CDY69318	Canola	cytosol	16.76	67.42
AT3G10970.1	Thale cress	plastid	62.85	61.64
KRH31223	Soybean	plastid	62.85	61.48
VIT_13s0067g02440.t01	Wine grape	plastid	61.73	61.39
KRG97648	Soybean	plastid	62.01	60.82
CDY00981	Canola	plastid	61.17	60.5
Bra029883.1-P	Field mustard	plastid	60.61	59.62
CDY08561	Canola	plastid	60.61	59.62
Solyc06g050310.2.1	Tomato	plastid	58.38	58.22
KXG35130	Sorghum	plastid	23.74	22.25
OQU75828	Sorghum	plastid	20.95	21.74
KXG26871	Sorghum	cytosol	6.7	19.83

Protein Annotations

EnsemblPlants:KXG21417	EnsemblPlantsGene:SORBI_3009G059300	Gene3D:1.10.150.240	Gene3D:3.40.50.1000	InterPro:HAD-like_sf	InterPro:HAD_sf
InterPro:IPR023198	InterPro:IPR023214	InterPro:PGP-like_dom2	PANTHER:PTHR18901	PANTHER:PTHR18901:SF29	PFAM:PF13419
ProteinID:KXG21417	ProteinID:KXG21417.1	SEG:seg	SUPFAM:SSF56784	UniParc:UPI0001C80894	UniProt:A0A1B6P6U1
MapMan:35.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:6215724..6219533

Molecular Weight (calculated)

40169.5 Da

IEP (calculated)

8.352

GRAVY (calculated)

-0.225

Length

358 amino acids

Sequence
(BLAST)

001: MESCSFRAAT APSPFPSAPS SSSSSSPRAR SLILRFPRPR KGRKIGVRRR ASGFDAFPPL PGKVFVDEAI GAEYGEGFET FRMDGPLKVD VDYLNEKLQE
101: CFLQRIRHAM KPDEAFGLIF SWDNVIADTD SLKLNAWSQL ALEEGKDIPS AAHVRKSILH GAADHVLRKV LYWAKEEDKM EKMKARLIEL YYENLFKLDT
201: PVEGLREWLD AVQTAGIPCA VASSLDRRCM IEALDRMALS KYFKAIVTDE DDMDSIANRF LSAAMKLDRK PSKCVVFEDD PRGVTAAHNC TMMAVALIGA
301: HPAYELVQAD LAIAKYSELS VINLRRLFAN KGISFMDLQK QIIEKSPPKR RLTVDTIF

Best Arabidopsis Sequence Match ( AT3G10970.1 )
(BLAST)

001: MDCSCSTRPS SLLISSEPSF RFPHSNFSSN LSFQIPKDTK LVKQRLVVRS SSGSDYQNGD VNGFPLKPNK LFMQEAIGAE YGEGFETFRQ DGPLKVDVDF
101: WNEKLQDGFL QRIRYAMKPD EAYGLIFSWD NVVADTRSLK LEAWKQLAAE EGKEITEEVD IQRLMLYAGA DHVLRKVLFW EKTQSKIDRL KLRLSEIYYD
201: SLLKLTEPKE GLRDWLDAVT TARIPCAVVS NLDRKNMINA LERMGLQKYF QAVVSEEDGM ESIAHRFLSA AVKLDRKPSK CVVFEDDPRG ITAAHNCTMM
301: AVGLIGAHRA YDLVQADLAV GNFYELSVIN LRRLFANKGS TFMDHEKQII EKSPPKRKLT IDTIF

Arabidopsis Description

Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J510]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.