CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG26871	Sorghum	cytosol	25.51	72.73
TraesCS2A01G409700.1	Wheat	plastid	69.86	69.86
Os04t0557000-01	Rice	plastid	70.43	69.43
Zm00001d026148_P002	Maize	endoplasmic reticulum	88.99	69.3
TraesCS2B01G428100.1	Wheat	plastid	66.67	66.67
TraesCS2D01G407000.1	Wheat	plastid	66.38	66.38
VIT_02s0025g03520.t01	Wine grape	cytosol	40.0	37.4
GSMUA_Achr5P20620_001	Banana	plastid	37.68	37.04
CDY13271	Canola	plastid	37.97	35.99
Bra035213.1-P	Field mustard	plastid	37.39	35.93
CDX86769	Canola	plastid	37.39	35.93
KRH41172	Soybean	plastid	39.13	35.81
KRH59874	Soybean	plastid	38.84	35.54
Solyc08g081030.1.1	Tomato	cytosol, plastid	39.13	35.53
PGSC0003DMT400031825	Potato	cytosol, plastid	38.55	35.0
KXG35130	Sorghum	plastid	37.39	33.77
AT4G11570.2	Thale cress	cytosol, plastid	36.23	33.51
KXG21417	Sorghum	plastid	21.74	20.95

Protein Annotations

Gene3D:1.10.150.240	Gene3D:3.40.50.1000	MapMan:7.10.5	EntrezGene:8071319	UniProt:C5Z498	ProteinID:EER89206.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016311	GO:GO:0016787	GO:GO:0016791
InterPro:HAD-SF_hydro_IA	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023198	InterPro:IPR023214	EnsemblPlants:OQU75828
ProteinID:OQU75828	ProteinID:OQU75828.1	PFAM:PF13419	InterPro:PGP-like_dom2	PANTHER:PTHR18901	PANTHER:PTHR18901:SF46
EnsemblPlantsGene:SORBI_3010G039500	SUPFAM:SSF56784	unigene:Sbi.11297	TIGRFAMs:TIGR01509	UniParc:UPI0001A895BF	RefSeq:XP_002437839.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:3112492..3115633

Molecular Weight (calculated)

38769.7 Da

IEP (calculated)

5.165

GRAVY (calculated)

-0.233

Length

345 amino acids

Sequence
(BLAST)

001: MISFNNLFGS SLQPSLKFYR KCLTNNPYFA LTMHSVTKPL GTAMMVKRAR LKPHATDMKR NPQVHELYEL VYRLPENLSW LLAPPEVPKR PTSKKKKQKD
101: EIVTSNSFGV ILEWEGVVVD DDDPDLEPRV WYVLSLEEGK SFPPDALLKK IEGMRTDQAI SEVLCWSEDP AEIQRLAAHK EVIYQTLRGG YYQLRSGVLD
201: FLNTLVGLDI PIAIATPHSR KSLEEGIKTV GLQGYFDAII ALEDFCLGKP DGEMFEVAAE QLGLEPDVCV VFGNSNLTTE SAHNAGMRCV AVAGRHPAYE
301: LQAANHVVRW LDQLSIVDLQ RLANGEVIGR RGRESDMDME IVIEE

Best Arabidopsis Sequence Match ( AT4G11570.1 )
(BLAST)

001: MAEAIGAVSL VGHRPSIVRI TVKNELKTQK SQSIVRFPVK VDYSAKGVLS HLMTQSVKKN RMSVFPIRAL AMELTKEKKK DDRLPKTWNY LDSGADDKPS
101: LWPPENKADK PSLHNPLLRQ ERMGCGWLGA IFEWEGVLIE DNPDLDNQSW LTLAQEEGKS PPPAFMLRRV EGMKNEQAIS EVLCWSRDPV QVRRMAKRKE
201: EIFKALHGGV YRLRDGSQEF VNVLMNNKIP MALVSTRPRE TLENAVGSIG IRKFFSVIVA SEDVYRGKPD PEMFIYAAQL LDFIPERCIV FGNSNQTIEA
301: AHDGRMKCVA VASKHPIYEL GAAELVVRRL DELSIIDLKK LADTDLTEFE PELEMEKEDE RELPSSAVAV DDF

Arabidopsis Description

PYRP25-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LDD5]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.