CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035213.1-P	Field mustard	plastid	100.0	100.0
CDY13271	Canola	plastid	93.04	91.76
AT4G11570.2	Thale cress	cytosol, plastid	80.78	77.75
VIT_02s0025g03520.t01	Wine grape	cytosol	67.41	65.58
KRH59874	Soybean	plastid	66.02	62.86
HORVU2Hr1G013970.1	Barley	cytosol	17.55	62.38
KRH41172	Soybean	plastid	64.07	61.01
Solyc08g081030.1.1	Tomato	cytosol, plastid	64.35	60.79
PGSC0003DMT400031825	Potato	cytosol, plastid	63.79	60.26
KXG35130	Sorghum	plastid	56.55	53.14
Os09t0569100-01	Rice	plastid	56.27	52.74
TraesCS4B01G009800.1	Wheat	plastid	55.71	52.22
GSMUA_Achr7P04430_001	Banana	plastid	49.58	52.05
GSMUA_Achr3P14430_001	Banana	cytosol	55.99	51.94
Zm00001d005329_P001	Maize	plastid	55.71	51.81
TraesCS4D01G006200.1	Wheat	plastid	55.15	51.7
TraesCS4A01G307800.1	Wheat	plastid	54.6	51.44
HORVU4Hr1G000510.1	Barley	plastid	54.87	50.9
GSMUA_Achr1P17450_001	Banana	cytosol, golgi, plastid	56.27	46.22
TraesCS2B01G428100.1	Wheat	plastid	36.21	37.68
OQU75828	Sorghum	plastid	35.93	37.39
GSMUA_Achr5P20620_001	Banana	plastid	36.49	37.32
Os04t0557000-01	Rice	plastid	36.21	37.14
TraesCS2D01G407000.1	Wheat	plastid	35.65	37.1
TraesCS2A01G409700.1	Wheat	plastid	34.82	36.23
KXG26871	Sorghum	cytosol	11.42	33.88
HORVU7Hr1G058150.1	Barley	plastid	25.63	30.16
CDY69318	Canola	cytosol	7.24	29.21
Zm00001d026148_P002	Maize	endoplasmic reticulum	35.65	28.89
CDY08561	Canola	plastid	24.51	24.18
CDY00981	Canola	plastid	23.96	23.76

Protein Annotations

Gene3D:1.10.150.240	Gene3D:3.40.50.1000	MapMan:7.10.5	GO:A0A078DEG5	EnsemblPlants:CDX86769	ProteinID:CDX86769
ProteinID:CDX86769.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
EnsemblPlantsGene:GSBRNA2T00145492001	InterPro:HAD-SF_hydro_IA	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023198	InterPro:IPR023214
PFAM:PF13419	InterPro:PGP-like_dom2	PANTHER:PTHR18901	PANTHER:PTHR18901:SF4	SUPFAM:SSF56784	TIGRFAMs:TIGR01509
UniParc:UPI0002546936	SEG:seg	:	:	:	:

Description

BnaA09g21590D

Coordinates

chrLK031847:-:551763..553317

Molecular Weight (calculated)

40640.1 Da

IEP (calculated)

6.534

GRAVY (calculated)

-0.350

Length

359 amino acids

Sequence
(BLAST)

001: MADAVSLVGH RPSIARISVF DKMQRSQNTV RFRVVFDKMQ SVVKKPIRAL AMELTKEMPA FKKKDGRKLP RTWNYLDSGS VDKPGLWPPE NKADKPSLHN
101: PLLRQERMGC GWLGAIFEWE GVLIEDSPDL ETQSWLTLAQ EEGKSPPPAF ILRRIEGMKN EQAISEVLCW SRDPAQVRRM ASRKEEIFKA LHGGVYRLRD
201: GSQEFVNVLM NNKIPMALVS TRPRETLENA VGSIGIKKFF SVIVASEDVH RGKPDPEMFV YAAQLLDFIP ERCIVFGNSN QTIEAAHDGK MKCVAVASKH
301: PMYELGAADL VVRRLDELSV IDLKKLAAVE LTEFEPELEM EKEDERELPS SNVAVDDFF

Best Arabidopsis Sequence Match ( AT4G11570.1 )
(BLAST)

001: MAEAIGAVSL VGHRPSIVRI TVKNELKTQK SQSIVRFPVK VDYSAKGVLS HLMTQSVKKN RMSVFPIRAL AMELTKEKKK DDRLPKTWNY LDSGADDKPS
101: LWPPENKADK PSLHNPLLRQ ERMGCGWLGA IFEWEGVLIE DNPDLDNQSW LTLAQEEGKS PPPAFMLRRV EGMKNEQAIS EVLCWSRDPV QVRRMAKRKE
201: EIFKALHGGV YRLRDGSQEF VNVLMNNKIP MALVSTRPRE TLENAVGSIG IRKFFSVIVA SEDVYRGKPD PEMFIYAAQL LDFIPERCIV FGNSNQTIEA
301: AHDGRMKCVA VASKHPIYEL GAAELVVRRL DELSIIDLKK LADTDLTEFE PELEMEKEDE RELPSSAVAV DDF

Arabidopsis Description

PYRP25-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LDD5]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.