CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67855
CDX68463
CDX70438
CDX78461
CDX91181
CDY45684
CDY60454
CDY67814
CDY70544

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10970.1	CDX68463	AT3G48550.1	21798944
AT3G10970.1	CDY60454	AT3G48550.1	21798944
AT3G10970.1	CDY70544	AT3G48550.1	21798944
AT3G10970.1	CDX67855	AT3G61150.1	21798944
AT3G10970.1	CDY45684	AT3G61150.1	21798944
AT3G10970.1	CDX70438	AT5G11980.1	21798944
AT3G10970.1	CDX78461	AT5G11980.1	21798944
AT3G10970.1	CDX91181	AT5G11980.1	21798944
AT3G10970.1	CDY67814	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08561	Canola	plastid	93.65	93.13
AT3G10970.1	Thale cress	plastid	88.12	87.4
CDY69318	Canola	cytosol	19.06	77.53
KRG97648	Soybean	plastid	67.13	66.58
KRH31223	Soybean	plastid	67.13	66.39
Solyc06g050310.2.1	Tomato	plastid	65.19	65.74
VIT_13s0067g02440.t01	Wine grape	plastid	65.19	65.56
Os05t0168300-01	Rice	plastid	61.33	62.54
GSMUA_Achr10P...	Banana	plastid	62.15	62.5
TraesCS1A01G111900.1	Wheat	plastid	61.05	62.08
TraesCS1D01G113400.1	Wheat	plastid	60.77	61.8
TraesCS1B01G132100.1	Wheat	plastid	60.5	61.52
KXG21417	Sorghum	plastid	60.5	61.17
HORVU1Hr1G024580.5	Barley	plastid	61.05	59.89
Zm00001d037512_P001	Maize	cytosol	55.8	50.25
CDX86769	Canola	plastid	23.76	23.96
CDY13271	Canola	plastid	23.2	23.08

Protein Annotations

EnsemblPlants:CDY00981	EnsemblPlantsGene:GSBRNA2T00110997001	Gene3D:1.10.150.240	Gene3D:3.40.50.1000	InterPro:HAD-like_sf	InterPro:HAD_sf
InterPro:IPR023198	InterPro:IPR023214	InterPro:PGP-like_dom2	PANTHER:PTHR18901	PANTHER:PTHR18901:SF29	PFAM:PF13419
ProteinID:CDY00981	ProteinID:CDY00981.1	SEG:seg	SUPFAM:SSF56784	UniParc:UPI0004EC62B6	MapMan:35.1

Description

BnaC05g42190D

Coordinates

chrLK031923:-:418400..421573

Molecular Weight (calculated)

40942.2 Da

IEP (calculated)

6.383

GRAVY (calculated)

-0.310

Length

362 amino acids

Sequence
(BLAST)

001: MDCSCRTRPS SLLISSEPSL RFPPSNLSLL VPKEAKLVKQ QRMVVRSCSS GSAQNGDVDG FSLKPNKLFV QEAIGAEYGE GFETFRQDGP LKVDVDFWNE
101: KLQDGFLQRI RYAMKPDEAY GLIFSWDNVV ADTRSLKLDA WKQLAAEEGK EIAEENDIQR LMLYAGADHV LSKVLFWEKT QSKIDTLKLK LSEIYYDNLL
201: RLTEPKEGLK DWLDAVTNAR IPCAVVSNLD RKNMMNALER MGLQNYFQAV VSEEDGMESI AHRFLSAAVK LDRKPSKCVV FEDDPRGITA AHNCTMMAIG
301: LIGAHRAYDL VQADLAVGNF YELSVINLRR LFANKGSTFM EHEKQIIEKS PPKRKLTIDT IF

Best Arabidopsis Sequence Match ( AT3G10970.1 )
(BLAST)

001: MDCSCSTRPS SLLISSEPSF RFPHSNFSSN LSFQIPKDTK LVKQRLVVRS SSGSDYQNGD VNGFPLKPNK LFMQEAIGAE YGEGFETFRQ DGPLKVDVDF
101: WNEKLQDGFL QRIRYAMKPD EAYGLIFSWD NVVADTRSLK LEAWKQLAAE EGKEITEEVD IQRLMLYAGA DHVLRKVLFW EKTQSKIDRL KLRLSEIYYD
201: SLLKLTEPKE GLRDWLDAVT TARIPCAVVS NLDRKNMINA LERMGLQKYF QAVVSEEDGM ESIAHRFLSA AVKLDRKPSK CVVFEDDPRG ITAAHNCTMM
301: AVGLIGAHRA YDLVQADLAV GNFYELSVIN LRRLFANKGS TFMDHEKQII EKSPPKRKLT IDTIF

Arabidopsis Description

Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J510]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.