Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY67814 | Canola | cytosol | 98.6 | 98.77 |
| CDX70438 | Canola | cytosol | 95.96 | 96.13 |
| CDX78461 | Canola | cytosol | 91.58 | 93.72 |
| AT5G11980.1 | Thale cress | cytosol | 92.28 | 92.44 |
| CDY17117 | Canola | extracellular | 9.3 | 63.1 |
| EER92716 | Sorghum | cytosol | 64.56 | 62.06 |
| Os12t0538300-01 | Rice | cytosol | 66.14 | 61.8 |
| TraesCS5B01G101300.1 | Wheat | cytosol | 65.26 | 61.08 |
| TraesCS5D01G107800.1 | Wheat | cytosol | 65.09 | 60.92 |
| TraesCS5A01G095100.1 | Wheat | cytosol | 65.09 | 60.13 |
| HORVU5Hr1G025740.13 | Barley | vacuole | 65.26 | 57.59 |
| CDY04606 | Canola | cytosol | 8.25 | 47.96 |
Protein Annotations
| EnsemblPlants:CDX91181 | EnsemblPlantsGene:GSBRNA2T00151986001 | GO:A0A078DPP2 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005794 | GO:GO:0017119 | InterPro:COG8 | InterPro:COG8_Metazoal_Plant | InterPro:Cullin_repeat-like_dom_sf |
| PANTHER:PTHR21311 | PFAM:PF04124 | PIRSF:PIRSF015415 | ProteinID:CDX91181 | ProteinID:CDX91181.1 | SEG:seg |
| SUPFAM:SSF74788 | UniParc:UPI0004EC5BC5 | MapMan:22.6.2.8 | : | : | : |
Description
BnaC02g04160D
Coordinates
chrLK031865:+:1260117..1263751
Molecular Weight (calculated)
63277.2 Da
IEP (calculated)
4.862
GRAVY (calculated)
-0.091
Length
570 amino acids
Sequence
(BLAST)
(BLAST)
001: MATEIGEMSP PETTASLLAL ASASQQPYVS ELLSFTLDRL HKEPELLRVD AERIQRQMQE VAVGNYRAFI TAADALLAIR QEVSSIDKHL ESLIGEVPKL
101: TSGCTEFIDS AENILEKRKM NQALLANHST LLDLLEIPQL MDTCVRNGNF DEALDLEAFV SKLATMHPKL PVIQALAAEV RQTTQSLLSQ LLQKLRSNIQ
201: LPECLRIIGY LRRIGVFGEY EMRLQFLRCR EAWLTGILED LDQKNAYEYL KGMINCHRMH LFDVVNQYRA IFADDTSGSE ENYDGGLLFS WAMHQITSHL
301: KTLKIMLPKI TEGGSLSNIL DQCMYCAMGL GWVGLDFRGL LPPLFEEAVL NLFSKNMSTA VENFQLVLDS HRWVPLPSVG FPSSGINDDS KDDVTPPSYL
401: MEHPPLAVFI NGVSAALNEL RPCAPLSLKN VIAHELIKGL QAVSDSLLRY NTTRMLRLNE SNLFLSLCRA FVEVVFPHCA TCFGRCYPGG ASIVMDAKSA
501: YEGLSRILAA SSSPEPSNKL AKTISIDPTS ASENGVTSQA EEKQVESPNE KEENSPIPLQ IPETTTPHES
101: TSGCTEFIDS AENILEKRKM NQALLANHST LLDLLEIPQL MDTCVRNGNF DEALDLEAFV SKLATMHPKL PVIQALAAEV RQTTQSLLSQ LLQKLRSNIQ
201: LPECLRIIGY LRRIGVFGEY EMRLQFLRCR EAWLTGILED LDQKNAYEYL KGMINCHRMH LFDVVNQYRA IFADDTSGSE ENYDGGLLFS WAMHQITSHL
301: KTLKIMLPKI TEGGSLSNIL DQCMYCAMGL GWVGLDFRGL LPPLFEEAVL NLFSKNMSTA VENFQLVLDS HRWVPLPSVG FPSSGINDDS KDDVTPPSYL
401: MEHPPLAVFI NGVSAALNEL RPCAPLSLKN VIAHELIKGL QAVSDSLLRY NTTRMLRLNE SNLFLSLCRA FVEVVFPHCA TCFGRCYPGG ASIVMDAKSA
501: YEGLSRILAA SSSPEPSNKL AKTISIDPTS ASENGVTSQA EEKQVESPNE KEENSPIPLQ IPETTTPHES
001: MAMEVGEMSQ PEATASLLSL ASATQQPYVS ELLSFTLDRL HKEPELLRVD AERIQRQMQE VAVGNYRAFI TAADALLAIR QEVSSIDKHL ESLIGEVPKL
101: TSGCTEFIDS AENILEKRKM NQALLANHST LLDLLEIPQL MDTCVRNGNF DEALDLEAFV SKLATLHPKL PVIQALAAEV RQTTQSLLSQ LLQKLRSNIQ
201: LPECLRIIGY LRRIGVFGEY EMRLQFLRCR EAWLTGILED LDQKNAYEYL KGMINCHRMH LFDVVNQYRA IFSDDTSGSE ENYDGGLLFS WAMHQITSHL
301: KTLKIMLPKI TEGGSLSNIL DQCMYCAMGL GGVGLDFRGL LPPLFEEAVL NLFSKNMSTA VENFQLVLDS HRWVPLPSVG FPSSGINEDS KDDVTPPSYL
401: MEHPPLAVFI NGVSSALNEL RPCAPLSLKN VVAHELIKGL QAVSDSLLRY NTTRMLRLSE SNLFLSLCRA FVEVVFPHCA TCFGRCYPGG ATIVMDAKSA
501: YEGLGRILAA SSSQEPSNKS PKVISTDTKD ASENGVASQP EEKQAENPNA KEEDNSPIPL QTPEITPES
101: TSGCTEFIDS AENILEKRKM NQALLANHST LLDLLEIPQL MDTCVRNGNF DEALDLEAFV SKLATLHPKL PVIQALAAEV RQTTQSLLSQ LLQKLRSNIQ
201: LPECLRIIGY LRRIGVFGEY EMRLQFLRCR EAWLTGILED LDQKNAYEYL KGMINCHRMH LFDVVNQYRA IFSDDTSGSE ENYDGGLLFS WAMHQITSHL
301: KTLKIMLPKI TEGGSLSNIL DQCMYCAMGL GGVGLDFRGL LPPLFEEAVL NLFSKNMSTA VENFQLVLDS HRWVPLPSVG FPSSGINEDS KDDVTPPSYL
401: MEHPPLAVFI NGVSSALNEL RPCAPLSLKN VVAHELIKGL QAVSDSLLRY NTTRMLRLSE SNLFLSLCRA FVEVVFPHCA TCFGRCYPGG ATIVMDAKSA
501: YEGLGRILAA SSSQEPSNKS PKVISTDTKD ASENGVASQP EEKQAENPNA KEEDNSPIPL QTPEITPES
Arabidopsis Description
Conserved oligomeric Golgi complex component-related / COG complex component-like protein [Source:UniProtKB/TrEMBL;Acc:Q84K25]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.