Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY36554 | Canola | cytosol | 89.33 | 90.54 |
| CDX81710 | Canola | plastid | 90.67 | 89.47 |
| CDY55983 | Canola | plastid | 90.67 | 89.47 |
| CDX96843 | Canola | cytosol | 89.33 | 89.33 |
| AT1G15385.1 | Thale cress | cytosol | 73.33 | 75.34 |
Protein Annotations
| EnsemblPlants:CDY39640 | EnsemblPlantsGene:GSBRNA2T00068209001 | InterPro:DUF761_pln | PANTHER:PTHR33098 | PANTHER:PTHR33098:SF6 | PFAM:PF05553 |
| ProteinID:CDY39640 | ProteinID:CDY39640.1 | SEG:seg | UniParc:UPI0004EDC9CD | UniProt:A0A078HMB4 | MapMan:35.2 |
Description
BnaC05g11690DBnaC05g11690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HMB4]
Coordinates
chrLK032453:-:212276..212503
Molecular Weight (calculated)
8562.3 Da
IEP (calculated)
10.569
GRAVY (calculated)
-0.939
Length
75 amino acids
Sequence
(BLAST)
(BLAST)
1: MKNNNNNKKN MKMNSGQESG NGTTNIVITE TRNKKVERKA SMDVDQCAEA FITNFRKQLL LQRLESIDNM LSRGL
1: MNNNKNMKMM MSSAKESGNG TTNIVIKETM NKKVERKASM DVDKSAEAFI TKFRNQLLLQ RLESIENMLS KGP
Arabidopsis Description
Cotton fiber protein [Source:UniProtKB/TrEMBL;Acc:Q8L7A6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.