Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026767.1-P | Field mustard | plastid | 79.45 | 76.32 |
| CDX81710 | Canola | plastid | 79.45 | 76.32 |
| CDY55983 | Canola | plastid | 79.45 | 76.32 |
| CDX96843 | Canola | cytosol | 76.71 | 74.67 |
| Bra016661.1-P | Field mustard | cytosol | 73.97 | 73.97 |
| CDY39640 | Canola | cytosol | 75.34 | 73.33 |
| Bra026137.1-P | Field mustard | cytosol | 69.86 | 68.92 |
| CDY36554 | Canola | cytosol | 69.86 | 68.92 |
Protein Annotations
| MapMan:35.2 | EntrezGene:838108 | UniProt:A0A178W575 | ProteinID:AEE29314.1 | EMBL:AK221651 | ArrayExpress:AT1G15385 |
| EnsemblPlantsGene:AT1G15385 | RefSeq:AT1G15385 | TAIR:AT1G15385 | RefSeq:AT1G15385-TAIR-G | EnsemblPlants:AT1G15385.1 | TAIR:AT1G15385.1 |
| EMBL:AY136377 | EMBL:BT000192 | InterPro:DUF761_pln | GO:GO:0008150 | RefSeq:NP_849669.1 | ProteinID:OAP12513.1 |
| PFAM:PF05553 | PANTHER:PTHR33098 | PANTHER:PTHR33098:SF6 | UniProt:Q8L7A6 | UniParc:UPI00000AC74A | SEG:seg |
Description
Cotton fiber protein [Source:UniProtKB/TrEMBL;Acc:Q8L7A6]
Coordinates
chr1:-:5292712..5293338
Molecular Weight (calculated)
8283.2 Da
IEP (calculated)
10.619
GRAVY (calculated)
-0.721
Length
73 amino acids
Sequence
(BLAST)
(BLAST)
1: MNNNKNMKMM MSSAKESGNG TTNIVIKETM NKKVERKASM DVDKSAEAFI TKFRNQLLLQ RLESIENMLS KGP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.