Factsheet for Bra016661.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004879.1-P
Bra006453.1-P
Bra013840.1-P
Bra019205.1-P
Bra040332.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15385.1	Bra004879.1-P	AT2G44950.1	21798944
AT1G15385.1	Bra040332.1-P	AT2G44950.1	21798944
AT1G15385.1	Bra006453.1-P	AT4G24840.1	21798944
AT1G15385.1	Bra013840.1-P	AT4G24840.1	21798944
AT1G15385.1	Bra019205.1-P	AT4G24840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96843	Canola	cytosol	95.89	93.33
Bra026767.1-P	Field mustard	plastid	89.04	85.53
Bra026137.1-P	Field mustard	cytosol	82.19	81.08
AT1G15385.1	Thale cress	cytosol	73.97	73.97

Protein Annotations

EnsemblPlants:Bra016661.1	EnsemblPlants:Bra016661.1-P	EnsemblPlantsGene:Bra016661	InterPro:DUF761_pln	PANTHER:PTHR33098	PANTHER:PTHR33098:SF6
PFAM:PF05553	UniParc:UPI0002545A75	UniProt:M4DJI3	MapMan:35.2	:	:

Description

AT1G15385 (E=1e-024) | unknown protein

Coordinates

chrA08:+:19469963..19470184

Molecular Weight (calculated)

8348.1 Da

IEP (calculated)

10.488

GRAVY (calculated)

-0.695

Length

73 amino acids

Sequence
(BLAST)

1: MKKNNRNIMK MSSAQESGNG TTNIVITETR NKKVERNASM DVDQCAEAFI TNFRKQLLLQ RLESIENMLS RGL

Best Arabidopsis Sequence Match ( AT1G15385.1 )
(BLAST)

1: MNNNKNMKMM MSSAKESGNG TTNIVIKETM NKKVERKASM DVDKSAEAFI TKFRNQLLLQ RLESIENMLS KGP

Arabidopsis Description

Cotton fiber protein [Source:UniProtKB/TrEMBL;Acc:Q8L7A6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.